Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K13
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0202 + 1464905-1465423 29 1.8
07_03_1660 + 28435230-28435331,28435518-28435748 28 4.1
07_01_0211 + 1568646-1568716,1568722-1569085 27 7.2
07_01_0210 + 1555941-1556390 27 7.2
07_01_0200 + 1433859-1434377 27 7.2
07_01_0196 + 1400708-1401226 27 7.2
07_01_0192 + 1367558-1368076 27 7.2
07_01_0188 + 1334405-1334923 27 7.2
03_05_0762 - 27524596-27524700,27525721-27526230 27 7.2
10_08_0510 + 18430580-18431781,18433176-18433554 27 9.5
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 27 9.5
06_03_1223 - 28526869-28527192,28527515-28527634,28527742-285278... 27 9.5
>07_01_0202 + 1464905-1465423
Length = 172
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A VG W+ K+S+ S +CT A+ +CG + +I+
Sbjct: 99 AADAVGLWMEEKASYVYSSNTCTKGAL-LDCGHYTQIV 135
>07_03_1660 + 28435230-28435331,28435518-28435748
Length = 110
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = -3
Query: 491 LPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPITMEDKTPVYAAL 312
+P F+ D K E+ N F +L +CL W + + ++ LH+ +++ +
Sbjct: 35 IPGFM--DLEYATRKKEMANKFRVMLLIKCLNWMDCNMLLDNLHLTEAAFRNRSMIRKCT 92
Query: 311 NKNKM 297
+ K+
Sbjct: 93 GEGKI 97
>07_01_0211 + 1568646-1568716,1568722-1569085
Length = 144
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A S V SW+ K + SC+ PA ++CG + +++
Sbjct: 70 AASAVSSWVAEKQWYDHDSNSCSAPA-GSSCGHYTQVV 106
>07_01_0210 + 1555941-1556390
Length = 149
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A S V SW+ K + SC+ PA ++CG + +++
Sbjct: 75 AASAVSSWVAEKQWYDHDSNSCSAPA-GSSCGHYTQVV 111
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A VG W+ K+ + S +CT A+ +CG + +++
Sbjct: 98 AADAVGLWMEEKADYVYSSNTCTRGAL-LDCGHYTQVV 134
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A VG W+ K+ + S +CT A+ +CG + +++
Sbjct: 98 AADAVGLWMEEKADYVYSSNTCTRGAL-LDCGHYTQVV 134
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A VG W+ K+ + S +CT A+ +CG + +++
Sbjct: 98 AADAVGLWMEEKADYVYSSNTCTRGAL-LDCGHYTQVV 134
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 52 AKSKVGSWLNSKSSFFESRRSCTTPAMTTNCGAFFKIL 165
A VG W+ K+ + S +CT A+ +CG + +++
Sbjct: 98 AADAVGLWMEEKADYVYSSNTCTRGAL-LDCGHYTQVV 134
>03_05_0762 - 27524596-27524700,27525721-27526230
Length = 204
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 503 PKYTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNT 384
PKY LP L+ D + E FE LA C WF +
Sbjct: 39 PKYGLPRGLIPDSVASYSFDEATGEFEIHLAGTCYVWFGS 78
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 340 SIVIGFTCKNTIILDVLNHSKHSLAKILSKGLSISVLFFFSPLSQSKKSGNVYLGG 507
SIV + I D ++ ++L +G+ +S +FF S + K G V G
Sbjct: 326 SIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESG 381
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 355 FTCKNTIILDVLNHSKHSLAKILSKGLSISVLFFFSPLSQSKK 483
FT ++ ++L HS SLA +++ + V FFF P S++
Sbjct: 703 FTAMWNVVFEILEHSYVSLAGVVT---LLMVSFFFVPTKLSRR 742
>06_03_1223 -
28526869-28527192,28527515-28527634,28527742-28527816,
28527905-28527964,28528271-28528370,28528664-28529148,
28529243-28529437,28529532-28529762,28529851-28529967,
28530247-28530330,28530755-28530893,28530939-28531090
Length = 693
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 212 HQNIIFGQPENAAKMFKILKKAPQLV 135
H + +G PEN K+F +++KA +V
Sbjct: 501 HAYLAYGVPENDIKLFSLMQKACYIV 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,061
Number of Sequences: 37544
Number of extensions: 287805
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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