Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K13
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical... 30 1.2
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 30 1.2
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 28 4.9
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 28 4.9
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 28 4.9
Z74026-3|CAA98418.1| 457|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF183390-1|AAF97864.1| 457|Caenorhabditis elegans Rh-like prote... 27 8.6
>U88175-3|AAB42280.1| 295|Caenorhabditis elegans Hypothetical
protein F21F3.3 protein.
Length = 295
Score = 31.9 bits (69), Expect = 0.30
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 111 ILYYTSHDNQLWSFFQNFKHFCSIFRLTEY 200
++Y +H+ +LW +F + F S+F +E+
Sbjct: 92 LVYTVAHEGELWEYFSRYFLFLSVFHFSEF 121
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
protein C14C10.4 protein.
Length = 1058
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 305 NKMYLRTYGKKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKA 147
N+M KIV L R ++ NE T +N++ PE A + K+ K A
Sbjct: 632 NEMITLDMAAKIVQLLEDDPRVQLNNEELTDARNVLKSSPEKAELLGKLRKSA 684
>AF036706-10|AAM97948.1| 633|Caenorhabditis elegans Hypothetical
protein T07A9.9b protein.
Length = 633
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = -3
Query: 278 KKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQLVVMAGVVQDRLLS 99
KK L +Y++V E++ H F PE +K+ +L++ +L+ AG + L S
Sbjct: 463 KKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEIQSKLENLLRE-EELLEQAGEYESDLDS 521
Query: 98 KNELLEFSQLPTLDLARSKLCQVLDSA 18
+E + L + + LD A
Sbjct: 522 DDEETKEKLKLALQIREKEKLLTLDHA 548
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/87 (25%), Positives = 39/87 (44%)
Frame = -3
Query: 278 KKIVSLATKGTRYEVVNELFTSHQNIIFGQPENAAKMFKILKKAPQLVVMAGVVQDRLLS 99
KK L +Y++V E++ H F PE +K+ +L++ +L+ AG + L S
Sbjct: 463 KKHYMLKNPDEKYDIVPEIWEGHNLADFVDPEIQSKLENLLRE-EELLEQAGEYESDLDS 521
Query: 98 KNELLEFSQLPTLDLARSKLCQVLDSA 18
+E + L + + LD A
Sbjct: 522 DDEETKEKLKLALQIREKEKLLTLDHA 548
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 476 LCDR-GEKKNKTEIDNPFERILARECLEWFN 387
+CD GEK +I+N R R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 476 LCDR-GEKKNKTEIDNPFERILARECLEWFN 387
+CD GEK +I+N R R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 476 LCDR-GEKKNKTEIDNPFERILARECLEWFN 387
+CD GEK +I+N R R CL +FN
Sbjct: 276 MCDNCGEKAENMQINNAMNRPECRACLIYFN 306
>Z74026-3|CAA98418.1| 457|Caenorhabditis elegans Hypothetical
protein B0240.1 protein.
Length = 457
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 394 HSKHSLAKILSKGLSISVLFFFSPLSQSKKSGNVY---LGGPYLGFDRSS 534
H+ H + IL+ LSI +F+ P S K ++Y +GG G DR +
Sbjct: 329 HNLHGMPGILAGLLSIGFAYFYEPESYGKTLYHIYPYWIGGELHG-DREN 377
>AF183390-1|AAF97864.1| 457|Caenorhabditis elegans Rh-like
protein-1 protein.
Length = 457
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 394 HSKHSLAKILSKGLSISVLFFFSPLSQSKKSGNVY---LGGPYLGFDRSS 534
H+ H + IL+ LSI +F+ P S K ++Y +GG G DR +
Sbjct: 329 HNLHGMPGILAGLLSIGFAYFYEPESYGKTLYHIYPYWIGGELHG-DREN 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,044,787
Number of Sequences: 27780
Number of extensions: 287043
Number of successful extensions: 860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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