Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K10
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    27   1.9  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   2.5  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   4.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   5.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   7.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.7  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   7.7  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 412 YRSQFFGEGK-SQEDVTWHAEDSRQDGIL 329
           + S FFG+G  S+ + TWH    R  G+L
Sbjct: 72  WTSGFFGKGNLSRSEPTWHTRTKRSLGLL 100


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 587 DEVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYRFASVDKVEDEIM 432
           D++  VDV  E+   E + IT  QD+       E+ D+    + D  +DE +
Sbjct: 68  DDLPQVDVENEDE--EEDSITSFQDEDDETSHQELSDNSEMNNRDDADDEFL 117


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = -3

Query: 653 QYSLVSDNLETSTENNEDFPKFDEVADV--DVIIEESVGEPNDITQIQDD-SSLDYFPEI 483
           Q  +V + +E   E  E+F +FD+  +   D+ I   +G+  D    QD  +S+   PE 
Sbjct: 105 QSGIVDNEMEKKVEEEEEFDEFDDFGEFEHDIPICTFMGDWQD--DFQDAVNSVFGLPET 162

Query: 482 DDSYRFASVDKVEDEIMDTAAGVIPFTIFRR 390
             +   +S+D   D I+     +I   + +R
Sbjct: 163 PKTIEESSLD--PDRILSLWQKLIEMPVLQR 191


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 614 ENNEDFPKFDEVADVDVIIEESVGE--PNDITQIQDDSSLDYFPEIDDSYRFASVDKVED 441
           + +E+  ++ +V D +VIIE+   +   N + + + DS  D    IDD+     VD  E+
Sbjct: 395 DEDEESDQYSDVEDTEVIIEDQDNQEISNHVAEEKIDS--DEEETIDDAKSEMFVDLSEE 452

Query: 440 E 438
           E
Sbjct: 453 E 453


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 674 DHXEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSS 504
           D    S   S  +DNL     N    P+  + +D D ++E S+   +  +Q QD+SS
Sbjct: 232 DDPYTSSVNSFANDNL---AHNKNIDPQIFQHSDTDNVVENSLQTEDVYSQNQDESS 285


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = -3

Query: 671 HXEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQ 516
           H E   Q   +    ET+ ++ ED  K  E+  +D+++ +++    D  +++
Sbjct: 77  HNEAKHQSKEIMLPKETNVKSCEDLSKTGEIKALDIVLFKAITSKGDTLKVK 128


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 431 PLFHLQLYRQ--MRIYKSRQFQENSPNL 508
           P  HL +Y    +R Y+S+QF+E  P++
Sbjct: 131 PYCHLPIYGDDVVRKYQSKQFKETKPHI 158


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 411 YNACCSIHYF 440
           +NACC+ HYF
Sbjct: 86  FNACCAFHYF 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,347
Number of Sequences: 5004
Number of extensions: 54658
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)