Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_K10
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 32 0.37
12_02_0122 + 13923510-13925081 31 1.1
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 31 1.1
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 30 2.0
01_06_1547 - 38150814-38151488,38151608-38151666,38151774-381519... 30 2.0
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 29 3.4
03_06_0318 + 33103467-33104232,33104332-33105548 28 6.0
11_06_0158 + 20756690-20756843,20756950-20757161,20757216-20757239 28 7.9
08_01_0580 + 5160866-5161013,5161221-5161289,5161403-5161462,516... 28 7.9
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = -3
Query: 680 TEDHXEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSL 501
T++ +E Q S D+ E E+ + E D ++ ++ + E ND+++ DD L
Sbjct: 527 TDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEENDVSESDDDEEL 586
Query: 500 DYFPEIDDSYRFASVDKVEDE 438
++DDS + D D+
Sbjct: 587 S--EKLDDSDEGSDQDDDSDQ 605
>12_02_0122 + 13923510-13925081
Length = 523
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = -3
Query: 509 SSLDYFPEIDDS--YRFASVDKVEDEIMDTAAGVIPFTIFRRRQ---KPRRRYMARRRFT 345
S + ++P D+ YR + D ++D G +P + R + R+R + +
Sbjct: 130 SVISFYPGEDERRLYRLVFHRRHRDLVLD---GYLPHVLAEGRAVTVRNRQRRLFTNNAS 186
Query: 344 PRWNPYRNFQYFYPYYGFYRPSSF 273
WNPYR + + + F P+SF
Sbjct: 187 TSWNPYRRGKGVWSHVPFEHPASF 210
>04_04_0827 -
28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 536 NDITQIQDDSS--LDYFPEIDDSYRFASVDKVEDEIMDTAAGVIPFTIF 396
ND + +SS +D + S ++S+D +EDEI DTA +P ++F
Sbjct: 505 NDASSTSQESSDKVDALESSESSSSYSSIDDIEDEI-DTACDNMPSSMF 552
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -3
Query: 542 EPNDITQIQDDSSLDYFPEIDDSYRFASVDKVEDEIMDTAAGVIPFTIFRRRQKPRRRYM 363
+P D T + DD SL+ ++ D + K E + T + F+R++KP ++
Sbjct: 314 KPEDSTVVVDDESLNSIDDVQDIHHI-EASKTEVKQNGTIDSMSTTVTFKRKRKPHTNHI 372
Query: 362 A 360
+
Sbjct: 373 S 373
>01_06_1547 -
38150814-38151488,38151608-38151666,38151774-38151919,
38152078-38152274,38152542-38152920,38153000-38153031
Length = 495
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = -3
Query: 674 DHXEESGQYSLVSDNLETST-ENNEDFPKFDEVADVDVIIEESVGEPNDITQ---IQDDS 507
D E G+ + E ST EN+ D P D+ D+++I+ V E ++ ++
Sbjct: 223 DSDSEDGEDPNNASADEQSTIENSADIPSGDDDEDLEMIVVRDVNEGEEVFNTYGTMGNA 282
Query: 506 SLDY---FPEIDDSYRFASVD 453
+L + F E+D+SY ++D
Sbjct: 283 ALLHRYGFTEMDNSYDIVNID 303
>12_01_1031 -
10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 387 PSPKNCERYNACCSIHYFIFNFIDRCESI 473
P NC+ C +H+ + NFI RC+SI
Sbjct: 526 PVDVNCKNEVLSCVVHHMVLNFI-RCKSI 553
>03_06_0318 + 33103467-33104232,33104332-33105548
Length = 660
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = -3
Query: 680 TEDHXEESGQYSLVSDNLETSTEN-NEDFP------KFDEVADVDVIIEESVGEPNDITQ 522
T D E Q+ V+ L+ + +N EDF KF V D I ++ V + +D+ Q
Sbjct: 148 TSDSESEPWQHGGVASLLDDAVDNLKEDFTLSHPKTKFAGVIPTDDIAQDQVAKNSDLIQ 207
Query: 521 IQDDSS 504
+Q+ S
Sbjct: 208 LQNGGS 213
>11_06_0158 + 20756690-20756843,20756950-20757161,20757216-20757239
Length = 129
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = -3
Query: 467 FASVDKVEDEIMDTAAGVIPFTIFRRRQKPRRRYMARRRFTPRWNPYRNFQYFYP 303
F+S D+++++ + P + RR++K +++ +R +W P ++ +P
Sbjct: 72 FSSGDEIDEDAVVELGEADPVSRKRRKEKEKKKRRKEKRKQRKWAPPDKDEFTFP 126
>08_01_0580 +
5160866-5161013,5161221-5161289,5161403-5161462,
5162055-5162120,5162294-5162335,5162427-5162495,
5163148-5163221
Length = 175
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -3
Query: 629 LETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYRFASVDK 450
L+ ST N +E D D ++++ EP + Q Q D L P+I + D
Sbjct: 97 LQESTTANGIAQIMEEETDTDDNVQQNKEEPAGLNQQQPDLGLADVPQIPEEAAPGPADP 156
Query: 449 VED 441
ED
Sbjct: 157 NED 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,830
Number of Sequences: 37544
Number of extensions: 289927
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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