Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K10
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    32   0.33 
U64852-8|AAB04971.3|  168|Caenorhabditis elegans Molybdenum cofa...    31   0.76 
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    31   1.0  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   4.1  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   4.1  
Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81503-4|CAB04110.2|  282|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80954-1|AAB38099.1|  345|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    27   9.4  

>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/69 (20%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = -3

Query: 644 LVSDNLETSTENNEDFPKFDEVADV-DVIIEESVGEPNDITQIQDDSSLDYFPEIDDSYR 468
           ++ DN++T++ + ++    + + D+ D+++++ +G+  +   + DD  +DY   +D+   
Sbjct: 46  MMVDNIDTNSMDGDEEADANRINDIEDMMLDDDLGDVAEEMDMGDDDQIDY--PVDELLE 103

Query: 467 FASVDKVED 441
           F     VE+
Sbjct: 104 FGDSGDVEE 112


>U64852-8|AAB04971.3|  168|Caenorhabditis elegans Molybdenum
           cofactor biosynthesisprotein 2 protein.
          Length = 168

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = -3

Query: 641 VSDNLETSTENNEDFPKFDEVADVDVIIEESVGE------PNDITQIQD 513
           VSD     T  +E  PK  E+ D   ++  +V E      P+D+T I D
Sbjct: 8   VSDTCSAGTRTDESGPKLVELVDTSAVVNATVNEGSPFVVPDDVTAIHD 56


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -3

Query: 665 EESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLDYFPE 486
           EE    S  S+ + T++EN+E+    DEV   ++   E+V +  D T  QDD   D   E
Sbjct: 386 EEIRPESNESEEVTTTSENSEETSTQDEV---ELKSAENVNDEEDHTSQQDDGEQDEQEE 442

Query: 485 IDDSYRFA 462
                RFA
Sbjct: 443 SKKWKRFA 450


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -3

Query: 665 EESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLDYFPE 486
           EE    S  S+ + T++EN+E+    DEV   ++   E+V +  D T  QDD   D   E
Sbjct: 359 EEIRPESNESEEVTTTSENSEETSTQDEV---ELKSAENVNDEEDHTSQQDDGEQDEQEE 415

Query: 485 IDDSYRFA 462
                RFA
Sbjct: 416 SKKWKRFA 423


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -3

Query: 665 EESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLDYFPE 486
           EE    S  S+ + T++EN+E+    DEV   ++   E+V +  D T  QDD   D   E
Sbjct: 359 EEIRPESNESEEVTTTSENSEETSTQDEV---ELKSAENVNDEEDHTSQQDDGEQDEQEE 415

Query: 485 IDDSYRFA 462
                RFA
Sbjct: 416 SKKWKRFA 423


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -3

Query: 665 EESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQDDSSLDYFPE 486
           EE    S  S+ + T++EN+E+    DEV   ++   E+V +  D T  QDD   D   E
Sbjct: 359 EEIRPESNESEEVTTTSENSEETSTQDEV---ELKSAENVNDEEDHTSQQDDGEQDEQEE 415

Query: 485 IDDSYRFA 462
                RFA
Sbjct: 416 SKKWKRFA 423


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 90  LXQFYWSCSTLCRLIYFITYLQNIF 16
           L  F  +C  LC L Y  TYL NIF
Sbjct: 54  LCVFLLACDALCSLCYIFTYLINIF 78


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -3

Query: 677  EDHXEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQD 513
            +D  E   Q   +  ++ T  E +E    F E      +  E   EP ++ ++QD
Sbjct: 3115 QDEHENQTQSEELRSSIPTEEEEHEGSHLFKETTTTTTVTREFYDEPENVEELQD 3169


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -3

Query: 677  EDHXEESGQYSLVSDNLETSTENNEDFPKFDEVADVDVIIEESVGEPNDITQIQD 513
            +D  E   Q   +  ++ T  E +E    F E      +  E   EP ++ ++QD
Sbjct: 3115 QDEHENQTQSEELRSSIPTEEEEHEGSHLFKETTTTTTVTREFYDEPENVEELQD 3169


>Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical
           protein T26H2.2 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 127 NKKKKSFNIFVNAXSILLELQYSL*INIFYNLFTKHF 17
           N    +FN  +N  S L++L YS      +NLF KH+
Sbjct: 242 NTSSLNFNGLLNLNSSLVDLSYSRFTEKDFNLFLKHW 278


>Z81503-4|CAB04110.2|  282|Caenorhabditis elegans Hypothetical
           protein F14F7.4 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 584 EVADVDVIIEESVGEPNDITQIQDDSSLDYFPEIDDS 474
           EVAD  ++ +E+ G+  D +  QD  +LD   E D+S
Sbjct: 196 EVADAFMMGQEATGDEEDESNWQDARTLDLLVEPDES 232


>U80954-1|AAB38099.1|  345|Caenorhabditis elegans Hypothetical
           protein T07F8.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 626 ETSTENNEDFPKFDEVADVDVIIEESVG-EPNDITQIQDDSSLDYFPEIDDSY 471
           E S+ NNED     E+A+ +V    S   EP+D T     +S+  F + DD Y
Sbjct: 69  ENSSANNED----TEIAEENVGESSSAAAEPHDSTIFDMGNSMSGFDDDDDDY 117


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 139 FPTFNKKKKSFNIFVNAXSILLELQYSL*IN-IFYNL 32
           F  F  ++ S NIFV+  S+ +E+Q+ L +  IF+ L
Sbjct: 133 FREFQAERSSLNIFVHLWSLSVEMQFYLLVPFIFFGL 169


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
            protein Y20F4.4 protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 539  PNDITQIQDDSSLDYFPEIDDSYRFASVDKVEDEIMDTAAGVIPFT 402
            P +  + +DD+SL+   +I +  R    +K+ D I   AAG  P T
Sbjct: 1185 PEERQKKKDDASLEIMRKIKEKGRRLEQEKMGDSIAPNAAGTPPPT 1230


>Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 539 PNDITQIQDDSSLDYFPEIDD 477
           P D+ ++ DDS  +Y P+++D
Sbjct: 579 PYDLNELMDDSIFEYLPKLED 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,247
Number of Sequences: 27780
Number of extensions: 294361
Number of successful extensions: 920
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)