Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K08
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical pr...    31   0.98 
U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical
           protein C38C6.5 protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -1

Query: 642 KHGAEILQPAQVAVVMKSAFAEDSPQWIEEICPNGYQMDVTGICREVWYDDYQYNNGY*V 463
           +HG  +      A   ++AF  DS +WIE +  +   ++V G   E   + YQY   Y  
Sbjct: 74  EHGQSLANKMAEASSSENAFFADSQKWIEALFDDDMVVEVCG--SEAKMNKYQYTM-YLA 130

Query: 462 ENNTRRKRSNEVM 424
             + R K+ +E M
Sbjct: 131 RESLRYKKVSENM 143


>U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical
           protein R11B5.1 protein.
          Length = 614

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 681 LGVYSRSRKPEINKHGAEILQPAQVAVVMKSAFAEDSPQWIEEICPNGYQMDVTGICREV 502
           L +  +++K E  +   E LQ       ++   A     W+E+I P   +M  +  CRE+
Sbjct: 236 LDILEQAKKKE-QRAEKERLQAKAEQKRLEEQTAAHCRVWVEQILPKWEEMKDSKRCREL 294

Query: 501 WY 496
           W+
Sbjct: 295 WW 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,566
Number of Sequences: 27780
Number of extensions: 364148
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)