Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K07
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    26   7.4  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   9.8  

>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 130 PPIKTWSPNFSH*NIQNHHCELSVC 56
           P  KTW P  +H   +NH+     C
Sbjct: 38  PGAKTWIPQINHRKSRNHYNRKETC 62


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 448 NSSCHTDRKKTS*CEKFSSNDNICQKLSLFLS 543
           N   +TD+   + C ++ +++N+ + L+LFL+
Sbjct: 27  NLEANTDKNVLALCREYLASENVKEVLNLFLT 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,483
Number of Sequences: 5004
Number of extensions: 59370
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)