Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K06
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    28   7.6  

>U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical
           protein ZC204.10 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 419 LKNLATLSLHILNFLPILSCLLNQILLMLFLVSR*INMFENSILIGT 279
           ++N+ +L LH++N   ILS   + ILL  FL ++ +N+     + G+
Sbjct: 185 IQNVRSLELHVVNLDYILSSNSSDILLYCFLSNKDLNLLMKQWIKGS 231


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 177 VSVMLCLKCIFLYVL*LFKIYFYTFILDKKNKVISTSITTWNXLH 43
           ++V+LC+ CI + +  L++IYF +  L   +K++  +  T+  +H
Sbjct: 25  IAVLLCIMCIPISIYSLWRIYF-SVKLHFNSKIVLFTNNTFVLIH 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,619,294
Number of Sequences: 27780
Number of extensions: 289706
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)