Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_K05
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88176-1|AAO91741.1|  459|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-...    27   9.2  

>U88176-1|AAO91741.1|  459|Caenorhabditis elegans Hypothetical
           protein F18F11.5 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 391 SYAFPGGDCYFIC*RYWNRICLFLSLNNDRGFVLPILLI*TTQLCISMNSRVPNSLDRYH 212
           S A   G  +F     +N I +    + + GFV+ I LI    + +       NSLDRYH
Sbjct: 331 SLAAVAGGVFFAIFLIYNGIQIACQCSLNEGFVVLIALILLPIIILLTTLCCNNSLDRYH 390

Query: 211 TD 206
            D
Sbjct: 391 AD 392


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 513 FAFMGLFKIARIFCLDFYLPI---KNFSPIYLIVIN*TSMGNITPT 385
           F F+G  +   +FC   +LP+     F   Y   +N TS+ +I PT
Sbjct: 86  FMFIGPSEFLTVFCCILFLPVTLHMRFEYFYKKSVNGTSLLSIQPT 131


>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           1 protein.
          Length = 1073

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 424 YQINW*KVLYW*IKIQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMV 582
           Y+INW +     +++ TKN   L K H R  + N+       L + ++ KN V
Sbjct: 61  YEINWARYNNGQLRMITKNDKLLAKKHSRFILENDSATGNYSLRITEVEKNSV 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,294
Number of Sequences: 27780
Number of extensions: 273163
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)