Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J24
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    29   0.99 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   4.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   7.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   7.0  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   9.3  

>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 13  STSLLPRHRSWPQAP----ARSCGLHSARRXMLSSXTPRNFFLKIKTAASHIGKQT 168
           ST + P+H S P+      + + GL   RR       P  +FLK + AA+HI ++T
Sbjct: 33  STRITPQHGSPPRFGDHRISAAQGLFQRRRNARKIDHPLGWFLKNRHAAAHIPQRT 88


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +1

Query: 439 FFSLKYFFTNNWVVVQFTXXXXXXXXXXXNMASIFYEIKKLLHFFKIV 582
           F +L+YF TN+WV                ++ +IF E K L     ++
Sbjct: 698 FTTLEYFLTNDWVDNHLIILCASLHSLKAHLPTIFDENKSLYSLLPVI 745


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/52 (21%), Positives = 23/52 (44%)
 Frame = +1

Query: 22  LLPRHRSWPQAPARSCGLHSARRXMLSSXTPRNFFLKIKTAASHIGKQTKIN 177
           L+  +  W  AP   C +HS    +  +   +++     +  SH+   T++N
Sbjct: 341 LVIENHKWTNAPKPVCVIHSVTPEVYKNPRYQSWISSFPSEVSHLIASTEVN 392


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 313 FSTKYLHMLRIYSLKVKDIPK*IFECTKYKHRNYNFAFVHFSFFSLKYFFTNNWVVVQF 489
           F+T Y   L +Y +   +    +    + +  + + +++  +FF+L + F+NN V+  F
Sbjct: 681 FATTYESFLYMYQILTSENWTDVMFAIQARLAHLHLSWIPGAFFTLWFLFSNNVVLSMF 739


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 774 WHLFFFITLFNTWMCLYRCRFELET-LEISILVHEAFEILVSL 649
           +HL+    L ++W   YR  F++ T   IS L  E   +L+S+
Sbjct: 864 YHLYIMTWLHHSWTLPYRDYFKIVTKTSISHLRREKSRLLISV 906


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 722 RYRHIHVLKSVMKKNKCHI 778
           RY H  VL  +MK+NKC +
Sbjct: 130 RYNHNTVLHILMKENKCSL 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,984
Number of Sequences: 5004
Number of extensions: 60106
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)