Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J24
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0442 - 15967204-15967501,15967954-15968126,15968581-159687...    30   1.8  
04_03_0441 + 15956927-15957191,15957359-15957737,15958197-159584...    29   4.2  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           29   5.5  
03_04_0202 - 18430330-18430484,18430617-18430756,18431316-18431389     29   5.5  
01_06_0025 - 25716563-25718332                                         29   5.5  
02_02_0537 + 11308195-11309667                                         28   9.6  
01_05_0645 - 23899579-23904483                                         28   9.6  

>04_03_0442 -
           15967204-15967501,15967954-15968126,15968581-15968716,
           15969064-15969288,15969792-15970053,15970062-15970169,
           15970337-15970595,15971188-15971199
          Length = 490

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 449 KLKNEKCT---NAKL*LRCLYLVHSNIHLGISLTFNEYIRSICK 327
           KLK E CT    +K  LR +YLV   +HLGI   F + I +  K
Sbjct: 16  KLKEEVCTLFTPSKDMLRRMYLVDEIVHLGIDHLFEKEIETALK 59


>04_03_0441 +
           15956927-15957191,15957359-15957737,15958197-15958421,
           15958549-15958684,15960559-15960810,15961585-15961881
          Length = 517

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 479 TTQLLVKKYFKLKNEKCT---NAKL*LRCLYLVHSNIHLGISLTFNEYIRSICK 327
           +T+ +  +  KLK + CT     K  LR +YLV   +HLGI   F + I +  K
Sbjct: 4   STEWMRDRADKLKEDVCTLFTPTKDILRRMYLVDEIVHLGIDHLFEKEIETALK 57


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 4    YNISTSLLPRH--RSWPQAPARSCGLHSARRXMLSSXTP 114
            +N   S LP++  R+ P+AP RSC    + +  L S  P
Sbjct: 1017 HNHPNSFLPQYILRTQPKAPCRSCAYKDSYKKKLKSQNP 1055


>03_04_0202 - 18430330-18430484,18430617-18430756,18431316-18431389
          Length = 122

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 665 SNASWTRIEISRVSNSNRQRYRHIHVL 745
           + A  TR  I  V+NSN QR  HIH L
Sbjct: 5   TRAPSTRAIIDEVNNSNSQRRHHIHQL 31


>01_06_0025 - 25716563-25718332
          Length = 589

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 149 LAAVLILRKKLRGVNEESXLRRAEWRPQERAGACGHDR----WRGSSDVLMLY 3
           +A +L   ++LRG+ E   L   E RP   +    HDR     RG +D + LY
Sbjct: 408 VAMLLEELRQLRGLMERQYLYNKEGRPYAASSLASHDRQRVATRGQADGVRLY 460


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 4   YNISTSLLPRH--RSWPQAPARSCGLHSARRXMLSSXTP 114
           +N   S LP++  R+ P+AP RSC    + +  L S  P
Sbjct: 175 HNHPNSFLPQYILRTQPKAPCRSCAYKDSCQKKLKSQNP 213


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 4    YNISTSLLPRH--RSWPQAPARSCGLHSARRXMLSSXTP 114
            +N   S LP++  R+ P+AP RSC    + +  L S  P
Sbjct: 1294 HNHPNSFLPQYILRTQPKAPCRSCAYKDSCQKKLKSQNP 1332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,295
Number of Sequences: 37544
Number of extensions: 318662
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)