Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J24
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    30   1.6  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    29   2.8  
Z66565-3|CAA91479.1|  177|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 379 IFECTKYKHRNYNFAFVHFSFFSLKYFFTNNW 474
           I + +K    NYN+    FS FS+ Y F N W
Sbjct: 30  ISKMSKQTFGNYNYLMFSFSSFSIVYSFVNFW 61


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 765 FFFITLFNTWMCLYRCRFELETLEISILVHEAF-EILVSL 649
           +++  + N  MCL    F LET  + ILVH+ + E  +SL
Sbjct: 265 WYYNQVLNNIMCLMFSMFGLETCVVMILVHKPYREFAISL 304


>Z66565-3|CAA91479.1|  177|Caenorhabditis elegans Hypothetical
           protein T04F8.3 protein.
          Length = 177

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 412 YNFAFVHFSFFSLKYFFTNNWV 477
           YNF F+ FSF S  YF++N+++
Sbjct: 139 YNFFFLQFSFLS-SYFYSNSFL 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,303
Number of Sequences: 27780
Number of extensions: 338159
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)