Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J23
(621 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 207 3e-53
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 207 3e-53
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 207 3e-53
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 207 3e-53
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 207 3e-53
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 207 3e-53
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 46 8e-05
BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein. 32 1.4
X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for ... 31 2.5
BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear ribonucle... 31 2.5
BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear ribonucle... 31 2.5
AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear ribonucle... 31 2.5
AK098652-1|BAC05366.1| 383|Homo sapiens protein ( Homo sapiens ... 31 3.3
DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short for... 31 4.3
DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short for... 31 4.3
DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short for... 31 4.3
DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short for... 31 4.3
DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short for... 31 4.3
DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short for... 31 4.3
BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein pr... 31 4.3
BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein. 31 4.3
BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 doma... 31 4.3
BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein. 31 4.3
BC044808-1|AAH44808.1| 440|Homo sapiens C14orf45 protein protein. 31 4.3
AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).). 31 4.3
AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isofo... 31 4.3
AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isofor... 31 4.3
AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form p... 31 4.3
AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form ... 31 4.3
AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear ribonucle... 30 5.7
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 30 7.6
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 30 7.6
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 30 7.6
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 30 7.6
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 30 7.6
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 30 7.6
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 30 7.6
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 30 7.6
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 30 7.6
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 30 7.6
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 207 bits (505), Expect = 3e-53
Identities = 101/141 (71%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 585 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 409
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 408 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 229
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 228 VYDAILEDLXFPAEXVGKRIQ 166
V+DAILEDL FP+E VGKRI+
Sbjct: 125 VHDAILEDLVFPSEIVGKRIR 145
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKVDTCQXGDKKRTGREVTXEGP 30
RVKLDG + IKVHLDK QQ +E KV+T KK TG++V E P
Sbjct: 145 RVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 207 bits (505), Expect = 3e-53
Identities = 101/141 (71%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 585 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 409
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 3 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 62
Query: 408 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 229
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 63 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 122
Query: 228 VYDAILEDLXFPAEXVGKRIQ 166
V+DAILEDL FP+E VGKRI+
Sbjct: 123 VHDAILEDLVFPSEIVGKRIR 143
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKVDTCQXGDKKRTGREVTXEGP 30
RVKLDG + IKVHLDK QQ +E KV+T KK TG++V E P
Sbjct: 143 RVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 188
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 207 bits (505), Expect = 3e-53
Identities = 101/141 (71%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 585 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 409
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 408 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 229
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 228 VYDAILEDLXFPAEXVGKRIQ 166
V+DAILEDL FP+E VGKRI+
Sbjct: 125 VHDAILEDLVFPSEIVGKRIR 145
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKVDTCQXGDKKRTGREVTXEGP 30
RVKLDG + IKVHLDK QQ +E KV+T KK TG++V E P
Sbjct: 145 RVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 207 bits (505), Expect = 3e-53
Identities = 101/141 (71%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 585 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 409
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 408 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 229
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 228 VYDAILEDLXFPAEXVGKRIQ 166
V+DAILEDL FP+E VGKRI+
Sbjct: 125 VHDAILEDLVFPSEIVGKRIR 145
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKVDTCQXGDKKRTGREVTXEGP 30
RVKLDG + IKVHLDK QQ +E KV+T KK TG++V E P
Sbjct: 145 RVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 207 bits (505), Expect = 3e-53
Identities = 101/141 (71%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 585 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 409
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 408 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 229
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 228 VYDAILEDLXFPAEXVGKRIQ 166
V+DAILEDL FP+E VGKRI+
Sbjct: 125 VHDAILEDLVFPSEIVGKRIR 145
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKVDTCQXGDKKRTGREVTXEGP 30
RVKLDG + IKVHLDK QQ +E KV+T KK TG++V E P
Sbjct: 145 RVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 207 bits (505), Expect = 3e-53
Identities = 101/141 (71%), Positives = 122/141 (86%), Gaps = 1/141 (0%)
Frame = -1
Query: 585 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 409
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 408 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 229
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 228 VYDAILEDLXFPAEXVGKRIQ 166
V+DAILEDL FP+E VGKRI+
Sbjct: 125 VHDAILEDLVFPSEIVGKRIR 145
Score = 53.6 bits (123), Expect = 5e-07
Identities = 26/46 (56%), Positives = 31/46 (67%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKVDTCQXGDKKRTGREVTXEGP 30
RVKLDG + IKVHLDK QQ +E KV+T KK TG++V E P
Sbjct: 145 RVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 46.4 bits (105), Expect = 8e-05
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = -1
Query: 246 SRTLTSVYDAILEDLXFPAEXVGKRIQ 166
SRTLT+V+DAILEDL FP+E VGKRI+
Sbjct: 10 SRTLTAVHDAILEDLVFPSEIVGKRIR 36
Score = 40.3 bits (90), Expect = 0.005
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -2
Query: 167 RVKLDGXQRIKVHLDKNQQTTIEQKV 90
RVKLDG + IKVHLDK QQ +E KV
Sbjct: 36 RVKLDGSRLIKVHLDKAQQNNVEHKV 61
>BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein.
Length = 648
Score = 32.3 bits (70), Expect = 1.4
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEKK
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645
>X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for U2
snRNP-specific A' protein. ).
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -1
Query: 528 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 361
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 360 RELEKKFSGK 331
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -1
Query: 528 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 361
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 360 RELEKKFSGK 331
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -1
Query: 528 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 361
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 360 RELEKKFSGK 331
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -1
Query: 528 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 361
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 360 RELEKKFSGK 331
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AK098652-1|BAC05366.1| 383|Homo sapiens protein ( Homo sapiens
cDNA FLJ25786 fis, clone TST06852. ).
Length = 383
Score = 31.1 bits (67), Expect = 3.3
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -1
Query: 174 RIQGQVGRXTAH*GALRQKPTDDD*TESGHLPGWRQE 64
RI G VGR AH G RQ P S H WR E
Sbjct: 327 RIMGVVGRAPAHMGEGRQPPPGASYPTSCHRTKWRSE 363
>DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short form
variant 5 protein.
Length = 1215
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short form
variant 2 protein.
Length = 1178
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 502 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 561
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 562 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 608
>DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short form
variant 7 protein.
Length = 1149
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short form
variant 6 protein.
Length = 1144
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short form
transcript variant 8 protein.
Length = 1020
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short form
protein.
Length = 1076
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 537 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 596
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 597 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 643
>BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein
protein.
Length = 627
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 394 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 453
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 454 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 500
>BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein.
Length = 1144
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 domain
protein) protein.
Length = 1721
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein.
Length = 1716
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC044808-1|AAH44808.1| 440|Homo sapiens C14orf45 protein protein.
Length = 440
Score = 30.7 bits (66), Expect = 4.3
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = -1
Query: 573 IKASGAEADSFETSISQALVEL-ETNSDLKAQLRELYITKAKEIE--LHNK-KSI-IIYV 409
+K E D+ + Q L E E + K +L + Y + E+E H K K I +I+
Sbjct: 85 LKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHT 144
Query: 408 PMPKLKAFQKIQIRLVRELE 349
+ ++ FQK +I++ REL+
Sbjct: 145 ELKAVRQFQKRKIQVERELD 164
>AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).).
Length = 255
Score = 30.7 bits (66), Expect = 4.3
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = -1
Query: 519 LVELETNSDLKAQLREL-YITKAKEIELHNK--KSIIIY-VPMPKLKAFQKIQIRLVREL 352
LVEL + D A L+ L Y++ + + + K + +IY VP ++ FQK++++ +E
Sbjct: 100 LVELG-DLDPLASLKSLTYLSILRNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
Query: 351 EKKFSGK 331
EK F GK
Sbjct: 159 EKMFKGK 165
>AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isoform
protein.
Length = 1220
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isoform
protein.
Length = 1721
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form
protein.
Length = 1721
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form
protein.
Length = 1220
Score = 30.7 bits (66), Expect = 4.3
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = -1
Query: 621 GRCFPSRKVVKMSTKIIKASGAEADSFET-------------SISQALVELETNSDLKAQ 481
GR P ++++ K ++ + DS T + L E+E + K Q
Sbjct: 539 GRLIPEKQILNDQLKQVQQNSLHRDSLVTLKRALEAKELARQHLRDQLDEVEKETRSKLQ 598
Query: 480 LRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 343
+++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 599 EIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 30.3 bits (65), Expect = 5.7
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -1
Query: 528 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 361
+ +LVEL + D A L+ L + NKK +YV P ++ FQ+++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQRVKLKER 155
Query: 360 RELEKKFSGK 331
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 29.9 bits (64), Expect = 7.6
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = -1
Query: 549 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 388
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 387 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 226
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSL 816
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,898,868
Number of Sequences: 237096
Number of extensions: 1763622
Number of successful extensions: 3677
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3671
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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