Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J21
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 43 4e-05
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 37 0.003
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 36 0.006
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 36 0.008
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 33 0.031
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 33 0.054
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.054
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.071
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.16
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 29 0.50
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.50
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.66
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.66
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 29 0.66
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 29 0.88
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.88
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.88
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 1.2
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 28 1.5
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.0
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 2.0
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.5
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 27 3.5
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 3.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 4.7
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 26 6.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 6.2
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 8.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.2
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 43.2 bits (97), Expect = 4e-05
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Frame = -3
Query: 587 ERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEE-- 414
E+++A + EA AE A+ K EV +L++ E + S++ ELEEE
Sbjct: 6 EKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETK 65
Query: 413 -LRVVGNNLKSLEVSEEKANQR----EEEYKNQIKTL---TTRLKXXXXXXXXXXRSVQK 258
LR+ +N + E+ +++ EEE + K L T +++ R VQ
Sbjct: 66 QLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQS 125
Query: 257 LQKEVDRLEDELVAEKEKYKDIGDDLD 177
L++E D +E +L +KY + +LD
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELD 152
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = -3
Query: 425 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKE 246
LE+E + + LKSLE ++ + EE ++ LT +LK + + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 245 VDRLEDELVAEKEKYKDIGDDLD 177
+ L++E +++ + + LD
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLD 979
Score = 32.3 bits (70), Expect = 0.071
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Frame = -3
Query: 716 EEDLERSEERXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLA 537
EE++ +E T ++L++A E+ K L+ + + + + +K+
Sbjct: 370 EEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQL 429
Query: 536 EEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKA- 360
EEA KLA + ++ ++E++LR N+ S E+ E+ A
Sbjct: 430 EEARSSLAHATGKLAEINSE----RDFQNKKIKDFEKIEQDLRACLNS-SSNELKEKSAL 484
Query: 359 -NQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEV 243
+++++E N L ++K S+Q LQ+++
Sbjct: 485 IDKKDQELNN----LREQIKEQKKVSESTQSSLQSLQRDI 520
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 35.9 bits (79), Expect = 0.006
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 3/173 (1%)
Frame = -3
Query: 710 DLERSEERXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEE 531
+L ++ER T L E A E + + +R ER+ +LENQ+
Sbjct: 861 ELTITKERVLQLTNDLQEEQALAHEKDILVERANSRVEVVHERLSSLENQV-------TI 913
Query: 530 ADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKANQR 351
AD+KY+ + + +E DL LE++L + K + K +
Sbjct: 914 ADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSI---KKDEQTISSKYKEL 970
Query: 350 EEEYKN---QIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDELVAEKEKY 201
E++Y N + + L ++++L +++ RL+DEL+ ++ Y
Sbjct: 971 EKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQRSY 1023
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 35.5 bits (78), Expect = 0.008
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Frame = -1
Query: 355 NAKRSTKIRSKPSPPV*RRLKHVPSS-PSVPCRNCKRRSIGLKTNLSPKRRNTRTSETIW 179
NAK + R SP L +PSS PS +N + I + S + N R++E ++
Sbjct: 186 NAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELVY 245
Query: 178 IPPS*SSFSRNKLPLYKD---PKSECPGNT-ISPRF 83
PPS + L L KD KS+C NT + P F
Sbjct: 246 PPPS-KDLLQKLLALEKDGQVEKSDCSKNTQLKPSF 280
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 33.5 bits (73), Expect = 0.031
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 11/175 (6%)
Frame = -3
Query: 716 EEDLERSEERXATATAKLSEASQAADESERARKVLENRS---LAD-EERMDALENQLKEA 549
++D++ ++R + ++ QA + ER + ++ +A+ E+ + +++L E
Sbjct: 750 KDDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEKEFNQYKHKLDEF 809
Query: 548 RFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXS-------KIVELEEELRVVGNNL 390
+ E+++ Y+ V + +E +L S +I ELE L +N
Sbjct: 810 TPILEKSENDYNGVKLECEQLEGELQNHQQSLVQGESTTSLIKTEIAELELSLVNEEHNR 869
Query: 389 KSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDE 225
K L E + + +I +L+T +K ++QKL E DRLE E
Sbjct: 870 KKLTELIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKLNHEFDRLERE 924
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 32.7 bits (71), Expect = 0.054
Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 1/166 (0%)
Frame = -3
Query: 716 EEDLERSEERXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLA 537
E + E + K + AD+ + +L+N ++ L+ Q + ++F
Sbjct: 334 ESKISEKENELSEILPKYNAIVSEADDLNKRIMLLKN------QKQSLLDKQSRTSQFTT 387
Query: 536 EEADKKYDE-VARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKA 360
+ K+ DE + +L + ++ ++ E+E EL+ + K +E+S E
Sbjct: 388 K---KERDEWIRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEIEISLESQ 444
Query: 359 NQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDEL 222
R + I ++ R + R KL+ ++ ++D+L
Sbjct: 445 GDRMSQLLANITSINERKENLTDKRKSLWREEAKLKSSIENVKDDL 490
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 32.7 bits (71), Expect = 0.054
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Frame = -3
Query: 668 KLSEASQAADESERARKVLENRSLADEE-RMDALENQLKEARFLAEEADKKYDEVARKLA 492
KL + + A S+ ++E S R++ L N+L+ + ++ +KK++E L
Sbjct: 642 KLLDMAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQ 701
Query: 491 MVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTT 312
+ ++++ S +E +L KSL +SE ++ +E YK+ + L +
Sbjct: 702 LEKSNIQLQLTSLTSERSLALEKLNDLE------KSLVLSERSKDELDESYKSLQEQLAS 755
Query: 311 R 309
+
Sbjct: 756 K 756
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.3 bits (70), Expect = 0.071
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -3
Query: 419 EELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVD 240
+ELR + NL+ + +++ + E + +L RLK ++ Q+ +
Sbjct: 713 KELRSINQNLQDIISRQDQRASKFAEELLHVNSLAERLKGELNASKGEKDLRKRTQERLI 772
Query: 239 RLEDELVAEKEKYKDIGDDLDT 174
D+L+AE+E+ + DL T
Sbjct: 773 SENDKLLAERERLMSLVSDLQT 794
Score = 28.7 bits (61), Expect = 0.88
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = -3
Query: 428 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 249
+L+E + N+L SL+ S EK+ EY ++IKTL + + Q ++
Sbjct: 823 KLKESNEKMSNDLHSLQKSLEKSGI---EYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEI 879
Query: 248 EVDRLEDELVAEKEKYKDI 192
++ L + EK+++ +
Sbjct: 880 KLQELNGVIELEKQRFSTL 898
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.16
Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Frame = -3
Query: 608 NRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIV 429
N + E + L + + +R +E + + ++L +E D + V
Sbjct: 475 NAIVEAESSKNELWDSMMVSRMKTQEQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDV 534
Query: 428 E-LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTR----LKXXXXXXXXXXRSV 264
+ L+E + + L+ + K+++ ++Y+ + L T ++ S+
Sbjct: 535 DQLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESI 594
Query: 263 QKLQKEVDRLEDELVAEKEKYKDIGDDLD 177
++EV++L DE+ E+Y D + D
Sbjct: 595 SLFKEEVEKLTDEITQLSERYNDKCHEFD 623
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.50
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = -3
Query: 716 EEDLERSEERXATATAKLSEASQAADES--ERARKVLENRSLADEERMDALENQLKEARF 543
++DL +++ L++ ES E +RK +E + LEN++KEAR
Sbjct: 273 QDDLSNQQKQQLDFMDSLNKKLSTELESIKEASRKEMETHCAT----IQTLENEVKEARK 328
Query: 542 LAEE----ADK--KYDEVARKLAMVE 483
+ EE A+K YDE+ R+L++++
Sbjct: 329 VKEESLTLANKFSDYDEIKRELSVLK 354
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.50
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 458 APRRAPS---QPQPWPAYEQPHRISCRPPQRGTWLPSADFRGRPCAPHPPTTCSRAPYVR 628
AP+ AP+ P P ++QP + S P +A F AP PPTT +
Sbjct: 446 APQSAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPL 505
Query: 629 ARIHRRPGWP 658
I PG P
Sbjct: 506 PPIPGAPGMP 515
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.66
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +2
Query: 536 QRGTWLPSADFRGRPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRXAPRTSRGP 712
+RG + R R +P P SR+PY R RR PR +R RSR SR P
Sbjct: 101 ERGGRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPR--YRSRSRSPDGRSRSP 157
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.66
Identities = 28/139 (20%), Positives = 60/139 (43%)
Frame = -3
Query: 542 LAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVGNNLKSLEVSEEK 363
+ +E D+ +E+ +++ E ++ +K+ + EE V N + + +
Sbjct: 539 ITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDLRR 598
Query: 362 ANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLEDELVAEKEKYKDIGDD 183
++ + +++ K LT+ L+ + L++ V LE E + K+ D
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLV-------ISSLRETVAMLEKERESIKKYLSGNAKD 651
Query: 182 LDTAFVELILKE*ASVIQR 126
LD + IL + SV+QR
Sbjct: 652 LDNTNLMEILNDKISVLQR 670
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 232 KTNLSPKRR-NTRTSETIWIPPS*SSFSRNKLPLYKDP 122
K NL PKR NTR S + IPP +S S P + P
Sbjct: 6 KLNLPPKRTINTRLSTPVHIPPPINSESTRITPQHGSP 43
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 28.7 bits (61), Expect = 0.88
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Frame = -3
Query: 572 LENQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXSKIVELEEELRVVG-- 399
LEN ++ R L+E +K+ DE+ L +E L +I + +++ +
Sbjct: 124 LENLDEQTRKLSERTEKQQDELDIALDDLEETLNTLKRTSENRDREIARISQDVYTMSTI 183
Query: 398 ---NNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVDRLE 231
+L+ ++ S+E+A Q + ++ L T K S+ L+ +D E
Sbjct: 184 TLPQSLEQIKKSQEEALQNLSREISSLRCLQTDSKKDDTFATTSNSSIPVLENPLDTSE 242
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.88
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = -3
Query: 428 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 249
E +L V+ N+KS + ++ +E+K +++ L +L ++ ++
Sbjct: 483 EQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQL-------VNSSTELESVKS 535
Query: 248 EVDRLEDELVAEKEKYK 198
E ++L++ELV E EK K
Sbjct: 536 ENEKLKNELVLEIEKRK 552
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.7 bits (61), Expect = 0.88
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 286 PSSPSVPCRNCKRRSIGLKTNLSPKR 209
P+SP+VP + S+ TN+SP+R
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRR 163
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 254 AVSAR--NARRTRHVLQPPSDGW 316
+V+AR N RR RHVL P +GW
Sbjct: 211 SVNARHDNLRRKRHVLVQPQEGW 233
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 437 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTL 318
+I +L EE + + ++ LE E+AN E+Y+ Q + L
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEAL 186
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 362 PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPHRISCRPP 535
PSP+ LP S Y + PP + P+ A P+ Q +IS PP
Sbjct: 402 PSPMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPP 459
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 653 SQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYD 513
S +++ +R++L S + E D L + L+ RF+ ++A K Y+
Sbjct: 84 SLGSNQYSISRQLLRQPSFSSSENTDRLADLLRVRRFIYQKAWKSYE 130
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 27.5 bits (58), Expect = 2.0
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Frame = -1
Query: 385 LWKSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSV---PCRNCKRRSIGLKTNLSP 215
L+KS+ + K+ + S SP L H + + P +N +RR+ L+T L P
Sbjct: 322 LFKSEEEKDPVGKQKLPLESSLSP-----LDHSSAEKEMQKAPAKNKRRRTGSLETGLYP 376
Query: 214 KRRNT----RTSETIW-IPPS*SSFSRNKLPLYKDPKSECPGNTISPR 86
K T R+ +W + S +R K L P+S +T P+
Sbjct: 377 KESPTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPESIMKKDTKWPQ 424
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 266 VQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 159
+QK +KE +LE++L + KY++ ++ + V+L
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQL 192
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 716 EEDLERSEERXATATAKLSEASQAADESERARKVLENRSLADEE 585
E D E SEE T + + SE S ++ + E S ++EE
Sbjct: 82 ESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEE 125
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -3
Query: 716 EEDLER----SEERXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEA 549
+++LER +++ KL + Q AD + AR+ + L +EE LE + +
Sbjct: 654 QQELERQKREEKQKQKEREKKLKKQQQEADREKMARE----QRLREEEEKRILEERKRRE 709
Query: 548 RFLAEEADKKYDEVARK 498
+ EE +++ E+ K
Sbjct: 710 KLDKEEEERRRRELLEK 726
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 716 EEDLERSEERXATATAKLSEASQAADESERARKVLENRSLADEER-MDALENQLKEARFL 540
E D + SEE T S++ Q+ADE+ +N S+A EE+ M + E L E
Sbjct: 743 ESDFD-SEEMDKAMTDMGSDSEQSADEN-------DNESMASEEKPMFSDEENLSEIAHS 794
Query: 539 AEEADKKYD 513
+E D D
Sbjct: 795 EDEFDDTVD 803
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 129 LYNGSLFLENELYEGGIQIVSDVLVFLLFGDKFVFKP--IDLLLQFLHGTLGELGTCFSL 302
LYN S ++ ++ S + V + +G +FVF+ ID L + LH L +G C L
Sbjct: 499 LYNISRGIDTDIINNETPRRS-ISVDVNWGVRFVFQEDGIDFLKRLLHELLSRMGKCQVL 557
Query: 303 L 305
L
Sbjct: 558 L 558
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 269 SVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE 147
+++ KEV ++ + +K+K D DD++ + E +L E
Sbjct: 69 TIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAE 109
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/92 (22%), Positives = 38/92 (41%)
Frame = -3
Query: 659 EASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVEA 480
+A++ + E+ ++ L R+ E +D+ E K A+ +KK+ E R A
Sbjct: 180 QAAELRSKDEQVKE-LNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAA 238
Query: 479 DLXXXXXXXXXXXSKIVELEEELRVVGNNLKS 384
L + IV +EE + V K+
Sbjct: 239 QLQTIHEEYEQQQAHIVRMEELIHAVEKERKT 270
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = -3
Query: 704 ERSEERXATATAKLSEASQAADESERARKVLENRSLADEERMDALENQLKEARFLAEEAD 525
E E+R A+++E + E E ARK E R E+ E + ++L+++
Sbjct: 261 EEEEQRIREEEARIAEEEKRLAEVEEARKE-EARLKKKEKERKKKEEMKAQGKYLSKKQK 319
Query: 524 KKYDEVARKL 495
++ R+L
Sbjct: 320 EQQALAQRRL 329
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 379 KSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSVPCRNCKRRSIGLKTNLSPKRRNT 200
KS K+S ++ KP V ++ P PS+ K S+ K+ PKR T
Sbjct: 106 KSNGNARKETKQSERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKS--KPKRAGT 163
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = -3
Query: 701 RSEERXATATAKLSEASQAADESERARKVLENRSLADEERMDALEN-QLKEARFLAE--- 534
+S+ + T LSE + E +EN ++ + + ++ + E+R L+
Sbjct: 825 KSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLH 884
Query: 533 ---EADKKYDEVARKLAMVE 483
E ++KY E RKLA++E
Sbjct: 885 NFSELEEKYAEYLRKLALLE 904
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,581
Number of Sequences: 5004
Number of extensions: 48954
Number of successful extensions: 261
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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