Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J20
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.12 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 364 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 254
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.12
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 136 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 26
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 299 LLIRRNSFLVLDLRLHILNC 358
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156



 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  LLIRRNSFFVLDLRLHVLNC 130
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 254 VRLQHSKRIHTPSCTASSW 198
           + LQ  K+ HTP+    +W
Sbjct: 785 IELQIQKQSHTPNGIVKTW 803


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,997
Number of Sequences: 438
Number of extensions: 2578
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)