Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J19
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 35 0.011
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 30 0.25
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 29 0.57
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 28 0.99
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 28 1.3
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 3.0
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 3.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 4.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 5.3
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 25 7.0
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.0
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.2
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.2
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 34.7 bits (76), Expect = 0.011
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = -1
Query: 522 KHDITFAYDATVLELKAHLERICGVPQSAQKLIIK-GMARDEMTLRKAGIVKGGKVMLVG 346
K+D+ + T LK L + VP QK+I+K G +D++ L GI ++++G
Sbjct: 12 KYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATLLMMG 71
Query: 345 SKMD-----DILAVKSVPKEILEE 289
+ + I AV+SV +E E+
Sbjct: 72 TAGELPTAMPIPAVESVEQEESED 95
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 375 VKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRKVLDKGI 214
V G ++LVG+ +DDI ++ + LE+K T + E + + K + L+ GI
Sbjct: 47 VPGSLLLLVGANVDDIELIQHEMESHLEKKLIT-VNTETMSVDKREKSYLEGGI 99
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.57
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 125 LPPCLFNIPLKGTGGRGSFTPLIPGITSGGIPLSSTFL*IFCMHNGSL 268
L P L+NI L FTP++P T G + L S I + G +
Sbjct: 109 LDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIVALFKGKI 156
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 0.99
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 257 NGSLLVWVVAFSSKISFGTLFTANMSSILDPTSI 358
+ +LL +VA + +SFG+L + N+ ++ D TSI
Sbjct: 247 SSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSI 280
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -1
Query: 396 TLRKAGIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQK-IHRKVLDK 220
T+R V GKV K + +K+VP E K SK P+ Q+ I V+ K
Sbjct: 65 TIRAWQDVAEGKVPASNEKAARVSNLKTVPSLKRENKEVNANSKPPVKQQEVIESTVISK 124
Query: 219 GIPPDV 202
P V
Sbjct: 125 SQSPSV 130
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = -1
Query: 411 ARDEMTLRKAGIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRK 232
+ DE LR I K L +K ++ VPK++ +++A T SKE +K
Sbjct: 175 SEDEQPLRTLSIEMAAKNALKEAKRENA----KVPKDVSKKEAKTTKSKEK-ATKKTSSS 229
Query: 231 VLDKGIPPDVMPGIKGVKEPL---PPVP 157
V + + +K ++ PL PP+P
Sbjct: 230 VPKQSTGENTKKAVK-LETPLTSTPPIP 256
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 326 NMSSILDPTSITFPPLTIPAFLSVISSRAIPL 421
N S++L PTS +F T+ A + S+ IP+
Sbjct: 620 NSSTLLSPTSTSFTSYTVSATATPTSTSHIPI 651
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 237 RKVLDKGIPPDVMPGIKGVKE 175
RKVL+K IPPD P I+ K+
Sbjct: 4 RKVLNKYIPPDYDPSIRPPKK 24
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 4.0
Identities = 25/107 (23%), Positives = 45/107 (42%)
Frame = +2
Query: 101 SGLNVNLTLPPCLFNIPLKGTGGRGSFTPLIPGITSGGIPLSSTFL*IFCMHNGSLLVWV 280
+ +N+NL + +F IPL G + ++PG S P L + + S +
Sbjct: 1117 TNVNINLYISNPIFQIPLTLENGSSAMVEILPGSFSLKTPSWLPNL-TLNLESKSTTLRT 1175
Query: 281 VAFSSKISFGTLFTANMSSILDPTSITFPPLTIPAFLSVISSRAIPL 421
+ +S N ++LD +I+ + A S I++ AI L
Sbjct: 1176 IYYSKDFD----EKGNQITVLDDLNISLDGSIVQAVDSAITNYAIDL 1218
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 284 AFSSKISFGTLFTANMSSILDPTSITFPPLTIPAFLSVISSRAIPLMINF*ADCGTP 454
A +S +S T +A M+S PT++ T P + +SS +I + N A+ TP
Sbjct: 205 ASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSNSVSSPSIQVSNNQNANNSTP 261
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 381 GIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSK 265
G ++ K+ V ++ +L + S+P+ +LE + T + K
Sbjct: 18 GSIESSKLFEVHPELKRVLPIISIPERVLEFRVTWEDDK 56
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 327 LAVKSVPKEILEEKATTQTSKEPLCMQKIHRKVLDK 220
L+ S P EI+ E ATT+ + + +Q R++ ++
Sbjct: 841 LSASSTPSEIMTEIATTKDKRTKMLLQLTLRRMCNE 876
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 291 EKATTQTSKEPLCMQKIHRKVLDKGIPPDVMPGIKGVKEPLP 166
E + +K +Q + +KV DK P + VKEP+P
Sbjct: 617 EVTSVSDNKLGATVQVVEQKVDDKADALTKPPSLDAVKEPIP 658
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 123 LYRHVYLTYHLKVLVVEAPLLL*FLALHQAEYL 221
++R + L+ HL + + +P+LL +L +H L
Sbjct: 12 IFRPLILSMHLSPVSILSPVLLIYLVIHSQNEL 44
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 265 FTSLGCSFFF*-NFLWDTFHSQYVIHFGSYKHNFSS 369
F SL S+ F NF+W TFH + + +F S
Sbjct: 3732 FISLKKSYSFSFNFIWSTFHQMLNVVLENRNQDFKS 3767
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,785
Number of Sequences: 5004
Number of extensions: 53250
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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