Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J19
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 36 0.027
02_04_0476 + 23248222-23248495,23249558-23249790 36 0.036
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 35 0.047
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 34 0.11
08_02_1470 - 27350173-27350643,27350721-27351167 34 0.11
01_06_1727 + 39477107-39477395,39477493-39477722 32 0.33
04_04_0281 + 24121267-24121537,24122567-24122799 31 0.58
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 30 1.3
05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673 30 1.8
04_04_1182 + 31531426-31531702,31533741-31533997,31534672-315348... 30 1.8
04_04_0588 - 26412487-26413887 30 1.8
03_05_0875 - 28434894-28435082,28435173-28435247,28435399-284354... 29 4.1
05_05_0175 + 22966151-22967614 28 5.4
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741... 28 5.4
08_01_0075 - 533839-534642,534653-534706,534890-534961,535377-53... 27 9.5
03_06_0004 + 30936670-30936726,30936858-30936905,30937045-309370... 27 9.5
02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055... 27 9.5
02_01_0104 - 767490-767627,768025-768158,768971-769229,769315-76... 27 9.5
01_06_1524 - 37980345-37980587,37980671-37980845,37980938-379810... 27 9.5
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 35.9 bits (79), Expect = 0.027
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = -1
Query: 552 VEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGI 376
+ V FN V H+I A+ ELK L G+ QK++ K RD L AG+
Sbjct: 48 IRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGV 107
Query: 375 VKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRKV 229
K++L+ + + E+A S+ L + K+ KV
Sbjct: 108 KDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISRISLDVDKLATKV 156
>02_04_0476 + 23248222-23248495,23249558-23249790
Length = 168
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 519 HDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLV 349
HD++ A +T ELK L + G+ Q+L+ +G R++ L G+ KV+L+
Sbjct: 81 HDVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLL 138
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 477 KAHLERICGVPQSAQKLIIK-GMARDEMTLRKAGIVKGGKVMLVGSKMDDILAVKSVP 307
K L + GVP QK+++K G+ +D+ G+ G K+M++G+ + + A + P
Sbjct: 28 KTQLYTLTGVPPERQKIMVKGGILKDDADWSTLGVKDGQKLMMIGTADEIVKAPEKGP 85
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 531 NKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKG-MARDEMTLRKAGI 376
N K + DATV K + C VP + Q+LI KG + +DE TL G+
Sbjct: 38 NGSKFTVRADLDATVGAFKEVVAGSCDVPAAQQRLIYKGRILKDEQTLESYGV 90
>08_02_1470 - 27350173-27350643,27350721-27351167
Length = 305
Score = 33.9 bits (74), Expect = 0.11
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Frame = -1
Query: 552 VEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGI 376
+ V +N V H+I A+ ELK L G+ QK++ + RD L AG+
Sbjct: 42 IRVKVKYNGVYHEIYINSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGV 101
Query: 375 VKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRKV 229
K++L+ + + E+A S+ L + K+ KV
Sbjct: 102 KDRSKMLLLEDPTAQAKRLLEERRHCKAERAAKSVSRVALDVDKLASKV 150
>01_06_1727 + 39477107-39477395,39477493-39477722
Length = 172
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 519 HDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLV 349
HD++ AT +LK L + G+ Q+L+ KG RD+ L G+ KV+L+
Sbjct: 86 HDVSIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLL 143
>04_04_0281 + 24121267-24121537,24122567-24122799
Length = 167
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = -1
Query: 519 HDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMARDEMT-LRKAGIVKGGKVMLVGS 343
HD++ T ELK + + G+ Q+L+ +G R++ L G+ KV+L
Sbjct: 80 HDVSIGATCTFGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLL--- 136
Query: 342 KMDDILAVKSVPKEILEEKATTQTSKEP 259
++D + L +AT Q+ +P
Sbjct: 137 -LEDPALKDMKLRAALAARATVQSPYQP 163
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 216 IPPDVMPGIKGVKEPLPPVPLSGMLNKHGGK--VRLTFKPDQDQLWLGTKERTEKLAM 49
+PP + + ++ P PP G+ +H GK + ++ +LWLGT + E AM
Sbjct: 208 LPPSLYQHL--LRAPGPPKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAM 263
>05_07_0266 - 28790917-28791307,28791565-28791714,28792201-28792673
Length = 337
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 204 VMPGIKGVKE-PLPPVPLSGMLNKHGGKVRLTFKPDQDQLWLG 79
VMPG G + PP PL G +VR+T Q Q LG
Sbjct: 266 VMPGAAGAYQFGAPPPPLLGFDEALAARVRMTMNQQQQQQQLG 308
>04_04_1182 +
31531426-31531702,31533741-31533997,31534672-31534818,
31535974-31536111
Length = 272
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 561 PEQVEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKGMAR 406
P +++ V + +H++ + A+ ELK L G+P + Q+L +G R
Sbjct: 68 PPEIKVRVKYGAARHEVAVSSIASFGELKKLLAARTGLPAADQRLTYRGKER 119
>04_04_0588 - 26412487-26413887
Length = 466
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 219 GIPPDVMPGIKGVKEPLPPVPL-SGMLNKHGGK--VRLTFKPDQDQLWLGTKERTEKLAM 49
G+PP + + ++ P PP L G+ +H GK + ++ +LWLGT + E AM
Sbjct: 195 GVPPWLYQQL--LRVPPPPQKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAM 252
>03_05_0875 -
28434894-28435082,28435173-28435247,28435399-28435490,
28435721-28435835,28436019-28436188,28436237-28436310,
28436397-28436553,28436658-28436730,28436898-28436960,
28437067-28437341,28437710-28437816,28437884-28438788,
28439742-28440032
Length = 861
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 505 CLRRHSVRTKSSFGKDMRRSAISSKINH---QRYGSR*NDAQESWNRQRRKSYACRIQNG 335
CLR ++ F D R+++ H R+G + W + R Y R ++G
Sbjct: 163 CLRSCHASRETGFQTDGSRNSVRLDYEHGIDDRHGEPDRYSNRRWETEERGCYKKRKKSG 222
Query: 334 *HIG 323
HIG
Sbjct: 223 CHIG 226
>05_05_0175 + 22966151-22967614
Length = 487
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -1
Query: 270 SKEPLCMQKIHRKVL---DKGIPPDVMPGIKGVKEPLPPVPLSGMLNKHGG 127
S PL Q+ H G+P D G K V+E LPP P G GG
Sbjct: 106 SSPPLSPQRTHVPFSWESSPGVPKDAACGRKVVREVLPPRPPPGRGGGGGG 156
>03_06_0116 +
31773295-31773603,31773800-31773946,31774080-31774158,
31777558-31778180
Length = 385
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = -1
Query: 639 ILQIDPPAEXSAGTSDTTEESEVCEIPEQVEFTVVFNKVKHDITFAYDATVLELK 475
+LQ+D A+ + + ++EE + PE E ++KH + Y ++ +L+
Sbjct: 171 VLQLDSIADSNCEGTGSSEEEQDTSCPEAEEIDPSDKQLKHQLLMKYGGSLGDLR 225
>08_01_0075 -
533839-534642,534653-534706,534890-534961,535377-535379
Length = 310
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 249 QKIHRKVLDKGIPPDVMPGIKGVKEPLPPVPLSGM-LNKHGGKVRLTFKPDQDQLWL 82
+K K + D G +GV+ +PP + GM L + + RL + LW+
Sbjct: 221 KKAKEKAASAAVCEDEQHGTRGVRIDVPPEEVGGMSLERSASQSRLRRQHSSRSLWV 277
>03_06_0004 +
30936670-30936726,30936858-30936905,30937045-30937080,
30937184-30937258,30937568-30937692,30937770-30937779,
30938125-30938296,30938547-30938665,30938868-30938978,
30939053-30939197,30939340-30939472,30939545-30939620,
30940141-30940206,30940308-30940415,30940750-30940857,
30940948-30941145,30941343-30941591
Length = 611
Score = 27.5 bits (58), Expect = 9.5
Identities = 24/64 (37%), Positives = 28/64 (43%)
Frame = -1
Query: 615 EXSAGTSDTTEESEVCEIPEQVEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSA 436
E S SD E S V PE V F V +HD AT+ L A L I VP+
Sbjct: 20 ETSRALSDLEEGSNVQ--PENVGFCRVIKLARHDAGKLVIATMALLVASLSNIL-VPKYG 76
Query: 435 QKLI 424
K+I
Sbjct: 77 GKII 80
>02_05_1231 -
35104832-35105002,35105104-35105167,35105267-35105557,
35105755-35105999,35106410-35106489,35106890-35107006,
35107150-35108002,35108081-35108161
Length = 633
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 420 KGMARDEMTLRKAGIVKGGKVMLVGSKMDDILAVKSVPKEILEEK 286
K + D TLR+AGI +G K+ +G ++ S P I+ E+
Sbjct: 401 KNIQNDNKTLRQAGICRGKKLNDIGFTLECEAGQDSHPGVIVPEE 445
>02_01_0104 -
767490-767627,768025-768158,768971-769229,769315-769403,
769624-769774,769860-770003,770611-770730,771490-771658,
771789-772087
Length = 500
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 113 VNLTLPPCLFNIPLKGTGGRGS 178
+N +PPC F I L GT G+ S
Sbjct: 280 INKFIPPCEFAIKLCGTNGKAS 301
>01_06_1524 -
37980345-37980587,37980671-37980845,37980938-37981001,
37981080-37981194,37982262-37982406,37984671-37984981
Length = 350
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Frame = -1
Query: 561 PEQVEFTVVFNKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIK----GMARDEMT 394
PE++ + + + D T+ ELK + + GV QKL+ +D
Sbjct: 29 PEEMTLVAKWKGNDYTVRVVGDDTLGELKRRICEVTGVLPKRQKLLYPKFKLNECKDSEL 88
Query: 393 LRKAGIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRKVLDK 220
+ K+ ++G+ D+I + EIL + Q + + ++++ L +
Sbjct: 89 ISSIPFKPNVKINMIGTVEDEIFVDQEDDPEILNDYEIGQNEVTAIKDKDVYKQKLKR 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,409
Number of Sequences: 37544
Number of extensions: 335101
Number of successful extensions: 977
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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