Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J14
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 2e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 54 2e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 54 2e-08
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 52 6e-08
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 52 6e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 50 3e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 49 6e-07
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 48 1e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 47 2e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 45 1e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 43 4e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 40 4e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 40 4e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 5e-04
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 40 5e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 39 6e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.001
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.002
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 38 0.002
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.003
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.006
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 32 0.074
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.098
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 31 0.17
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.69
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.6
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.8
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 26 6.4
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 6.4
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 6.4
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 6.4
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/79 (30%), Positives = 44/79 (55%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
++V I +E L Q+F +G + ++++++P TK ++GF F++ +EA AI L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 463 NGYTLNGQVLSVSFKTQKR 407
N G+VL+V + R
Sbjct: 163 NSQEFYGRVLNVQKAKRSR 181
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 54.0 bits (124), Expect = 2e-08
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMRE 497
V+V N+ E EE LW+ FG G+ID +++++DP+T KGFA++ ++
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKD 320
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/75 (38%), Positives = 41/75 (54%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
T+ V N+ ++T E L LF +G I + + KD ET + KGFAFV+ + D A A
Sbjct: 203 TLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDR 262
Query: 466 LNGYTLNGQVLSVSF 422
L+GY N +L F
Sbjct: 263 LDGYGWNNLILRCEF 277
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 52.4 bits (120), Expect = 6e-08
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = -2
Query: 649 TTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
+T++V N+ +T++ L F G I V+ +PET +N+G+ FV ++A A +
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 469 ALNGYTLNGQVLSVSFKT-QKRS 404
L L+G++L + F T +KRS
Sbjct: 65 ELKNKKLHGRILRLDFATPRKRS 87
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 652 QTTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMR 500
+ TV+V N+ E E L+ F +G + K++KDP T ++ G F+ R
Sbjct: 276 EDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 32.7 bits (71), Expect = 0.056
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = -2
Query: 589 FGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQALNGYTLNGQVLSVSFKTQK 410
F +G + IK I + GFAFV M++ A A+ +LNG ++G+ ++V + K
Sbjct: 128 FSKFGKVREIK-IPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 52.4 bits (120), Expect = 6e-08
Identities = 29/81 (35%), Positives = 43/81 (53%)
Frame = -2
Query: 649 TTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
T VY+ N+ E E LFG +G I S+ ++KD + K +GF FVN ++ A A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319
Query: 469 ALNGYTLNGQVLSVSFKTQKR 407
LN G+ L V + QK+
Sbjct: 320 ELNDKEYKGKKLYVG-RAQKK 339
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
++YV + E L++LF G + SI+V +D T+++ G+A+VN ++ A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 466 LNGYTL 449
LN YTL
Sbjct: 141 LN-YTL 145
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+++ N+ +E ++ L F +G I S K++ D E K+KGF FV +EA A+ +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 463 NGYTLNGQVLSVSFKTQK 410
N L G+ L V+ +K
Sbjct: 425 NQRMLAGKPLYVALAQRK 442
Score = 43.2 bits (97), Expect = 4e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
V++ N+ + AL F +G I S KV D E KG+ FV+ + A AI+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 463 NGYTLNGQVLSVSFKTQKRSGQ 398
NG LN + + V +R Q
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQ 250
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 50.0 bits (114), Expect = 3e-07
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
V+V NI + E + ++F G + + K++ DPET KG+ F + + AMA++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 463 NGYTLNGQVLSVSF 422
N L + + V F
Sbjct: 69 NNSELGPRKIRVEF 82
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
TV+V N+ E L FG G I SI++ DP++ + KGF +V + D A ++
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE- 425
Query: 466 LNGYTLNGQVLSVSFKTQKRSG 401
+NG+ + G+ + F T + G
Sbjct: 426 MNGHFIAGRPCRLDFSTPRTGG 447
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
TV+V + ++ L Q F YG I +VI D ++ ++KG+ +V+ E EAA A A
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF-ETPEAAKAAVA 322
Query: 466 LNG-YTLNGQVLSVSFKTQK 410
NG ++G+++++ +
Sbjct: 323 ANGTKEIDGRMVNLDLSNPR 342
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/76 (31%), Positives = 43/76 (56%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
T+ V N+ + + ++FG YG ID I + +++ NKG+ ++ +D+AA A+
Sbjct: 100 TILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDK 159
Query: 466 LNGYTLNGQVLSVSFK 419
+N L+G+ L VS K
Sbjct: 160 MNNAELDGEELFVSIK 175
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+YV N+ T + L LF G++ ++ +P T ++KGF V ++AA +I+ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 463 NGYTLNGQVLSVSF 422
NGY G+ L +S+
Sbjct: 341 NGYRYGGRPLQLSY 354
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
VYV NI E E + +F G + S +++ DPE+ + KG+ F + AA A++ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 463 NGYTLNGQVLSVSFKT 416
N Y + L V F T
Sbjct: 67 NNYDAGTRRLRVDFPT 82
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+++ N+ E L LFGP+G ++ + + D +T KGFA+++ + D+A A L
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 463 NGYTLNGQVLSV 428
+ G++L V
Sbjct: 385 DAKPFQGRLLHV 396
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKK-----NKGFAFVNMREYDEAA 482
T+YV N+ T++ ++F P S + P+ K+ + GF FV ++ A
Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679
Query: 481 MAIQALNGYTLNGQVLSVSFKTQ 413
A+ A+NG+ L+G L + Q
Sbjct: 680 AAMHAMNGFVLDGHKLEIKLSHQ 702
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = -2
Query: 649 TTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
T + + N+ E + + L G YG + S++V K + + +GFAF EAA A++
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFD-RSARGFAFAEFVTAREAANAMR 779
Query: 469 ALNGYTLNGQVLSVSF 422
AL L G+ L + +
Sbjct: 780 ALKNTHLLGRHLVLQY 795
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/76 (28%), Positives = 43/76 (56%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
++V N+G + + +L+Q F Y ++ KV++D E K +GF FV+ ++ D+ A +
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREK 90
Query: 463 NGYTLNGQVLSVSFKT 416
NG + + + +S T
Sbjct: 91 NGKYIGSRPVKLSRAT 106
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
T+++ + +T+E + + F YG I+ I+V+++ T K+ G+AFV + +A +A
Sbjct: 101 TMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKA 160
Query: 466 LNGYTLNGQVLSV 428
G LNG+ + V
Sbjct: 161 SAGLMLNGRRIVV 173
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = -2
Query: 631 NIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQALNGYT 452
NI T++L +LF +G I S + P T+ +KG+ FV+ EA AI LNG
Sbjct: 429 NIVGNTQQLE--ELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVL 486
Query: 451 LNGQVLSVSFKTQK 410
+ L V++ ++
Sbjct: 487 FGKKRLFVNYAEKR 500
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = -2
Query: 652 QTTVYVYNIGEETEELALWQLFGPYGAIDSIKVI-----KDPETKKNKGFAFVNMREYDE 488
+ ++YV N+ + L +LF P+G ++ K ++K FAF+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 487 AAMAIQALNGYTLNGQVLSVSF 422
A AI +LNG + G L V +
Sbjct: 79 ADNAIASLNGSSFQGNTLKVEY 100
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
++V N+ +E L+ F G + + E ++KG+ FV+ ++ A AI+A+
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 463 NGYTLNGQVLSVSFKTQKRSGQ 398
N L + ++VS+ KR G+
Sbjct: 161 NNQFLMNKPITVSY-AFKREGK 181
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = -2
Query: 649 TTVYVYNIGEE--TEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMA 476
+ +YV N+ + T + L LF P+G+I S + P + +KG+ FV R+ + A A
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 475 IQALNGYTLNGQVLSVSFKTQK 410
LNG + + + V F +K
Sbjct: 442 KDTLNGMMVGKKRIFVCFAERK 463
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -2
Query: 526 KGFAFVNMREYDEAAMAIQALNGYTLNGQVLSVSFKTQ 413
+G AF N +EA + +Q LNGY +NG+ L V +K Q
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQ 280
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+Y+ N+ E + +L P+G + S ++IK+ +KGF F + +A +AI L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 463 NGYTLNGQVLSVSF 422
+G G L F
Sbjct: 372 DGKDTYGNKLHAQF 385
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 39.5 bits (88), Expect = 5e-04
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -2
Query: 646 TVYVYNIGEETE----ELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAM 479
T+Y+ NI E+ + L LFG YG + ++ K T + +G AFV + A+
Sbjct: 27 TLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLENASR 83
Query: 478 AIQALNGYTLNGQVLSVSFKTQK 410
A++ L GY L G+ + + + K
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSK 106
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+Y+ N+ + E + +F +G I +++D ET K+KGFAF+ + +A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 463 NGYTLNGQVLSV 428
L +++ V
Sbjct: 93 TNVKLLDRLVRV 104
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 0.001
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGP-YGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
+++V ++ TE+ L+ F Y + S K+I DP T ++ + FV E A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 469 ALNGYTLNGQVLSVSFKTQK 410
+ GY G+ L +S + K
Sbjct: 243 HMQGYLCQGRPLRISVASPK 262
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -2
Query: 649 TTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
TTV+V + E L F P+G I +IK+ KG FV E A AI
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKI------PFGKGCGFVQYSEKSAAEKAIN 350
Query: 469 ALNG 458
+ G
Sbjct: 351 TMQG 354
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = -2
Query: 592 LFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQALNGYTLNGQVLSVSFKTQ 413
+F P+G I+ + + +D + + +KGF ++ R A A++ +NG+ L G+ + V
Sbjct: 359 IFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGND 417
Query: 412 K 410
K
Sbjct: 418 K 418
Score = 33.1 bits (72), Expect = 0.042
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -2
Query: 646 TVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQA 467
TV+V + L+ F G + ++++D + ++KG A+V D AI A
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-A 299
Query: 466 LNGYTLNG 443
L+G L G
Sbjct: 300 LSGKRLLG 307
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 526 KGFAFVNMREYDEAAMAIQALNGYTLNGQVLSVSFKTQ 413
+G AF N +EA +Q LNGY + G+ L V +K Q
Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQ 310
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+YV NI + E + F YG ++S+++ K ++KGF +V M +A A+ A
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 463 NGYTLNGQVLSVSFKTQKRS 404
G L +VL+V + S
Sbjct: 817 -GKQLGNRVLNVVLSKPRES 835
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2
Query: 649 TTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
T +YV N +EL + +LF YG + ++ N+ F +V MR+ DEA A+Q
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVR-FPSLRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
+++ N+ + ++ LFG YG + I++ T + +G AFV +A A + L
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENVQDARRACEKL 70
Query: 463 NGYTLNGQVLSVSFKTQKRS 404
+GY + L V + +R+
Sbjct: 71 SGYNFMDRYLVVHYYNPERA 90
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 32.3 bits (70), Expect = 0.074
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQAL 464
VY+ + T + L +G + S K I D ET KG+ F E A + I A+
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICISAM 357
Query: 463 N--GYTLNGQVLSVSFKTQ 413
GY + S S + Q
Sbjct: 358 TLCGYQCSFAKESFSARLQ 376
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.098
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = -2
Query: 652 QTTVYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAI 473
+ ++V + T++ L +F +G I S +VI+D ET + +AF+ + A
Sbjct: 243 ENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302
Query: 472 QALNGYTLNGQVLSVSF 422
+ ++ + V F
Sbjct: 303 FKMQNVLIDDSRIHVDF 319
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 616 TEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQALNGYTLNGQV 437
T +++WQL PY S+ +++ K N F + E I+ YTL V
Sbjct: 688 TRHISVWQLLSPYWPTVSVAIVQGMGKKPNIASLFAQLMNISEGDFLIRT-QAYTLPFLV 746
Query: 436 LS 431
L+
Sbjct: 747 LT 748
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.69
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKV----IKDPETKKNKGFAFVNMREYDEAAMA 476
V+V + T++ + LF G + + + ++ G AFV ++ A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 475 IQALNGYTLNGQVLSV 428
I+ LNG TL+ + + V
Sbjct: 106 IETLNGKTLDDREIVV 121
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 541 ETKKNKGFAFVNMREYDEAAMAIQALNGYTLNGQVLSV 428
E ++ +GF FV+ ++ + AI+ +NG + L V
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVV 290
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.9 bits (59), Expect = 1.6
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -2
Query: 646 TVYV--YNIGEETEELAL-WQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMA 476
T+YV + G ELA ++ FGP D I P T+ ++ FAFV + +A A
Sbjct: 8 TLYVTGFRDGMRARELAYEFEPFGPLIRCD----IPIPRTRTSRPFAFVEYEDSRDAEDA 63
Query: 475 IQALNGYTL--NGQVLSVSFKTQ 413
++G L G VL V + Q
Sbjct: 64 YYEVHGRRLERGGGVLRVEWAKQ 86
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 643 VYVYNIGEETEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFV 509
++V N+ +++ L F G + S+++ D + + KG+AFV
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 506 VHKCKTFIFLSFWIL 550
VHK K+F+F+ FW L
Sbjct: 93 VHKNKSFLFIQFWPL 107
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 532 KNKGFAFVNMREYDEAAMAIQALNGYTLNGQVLSVSFKT 416
+NKGFA+V+ D +A+Q + LNG+ + + T
Sbjct: 163 QNKGFAYVDFATEDALKLALQC-SEKALNGRNILIKSNT 200
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 480 WPSRLSMGTRSMDRFYLLALRHRNEAVSECGRCDAVSVIIL 358
W SR + YLL RH NE CGR + ++ I+
Sbjct: 105 WYSRAYAKRMEIKPEYLLPDRHINEVYVSCGRDENLTSCII 145
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 6.4
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 643 VYVYNIGEE--TEELALWQLFGPYGAIDSIKVIKDPETKKNKGFAFVNMREYDEAAMAIQ 470
VY +I + TEEL L + YG I+SIK +K+ ++ GF Y + A++
Sbjct: 502 VYFSHISDSLTTEELEL--ILRQYGEIESIKYLKN----RSSGFV-----AYTNISNAMK 550
Query: 469 ALNGYTLN 446
A+NG ++
Sbjct: 551 AVNGLPIH 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,791
Number of Sequences: 5004
Number of extensions: 57894
Number of successful extensions: 178
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -