Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J12
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 236 1e-62
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.46
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.46
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.46
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.46
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.46
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.46
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 5.7
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 5.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 236 bits (577), Expect = 1e-62
Identities = 108/159 (67%), Positives = 127/159 (79%)
Frame = -2
Query: 562 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 383
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 382 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 203
D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 202 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVE 86
L RKK AKL+E + AI+NKKRS T +KY RQ+ A V+
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVD 159
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -3
Query: 78 LEEQFHTGRLLACVARRPGTV 16
L EQF+TGRLLA ++ PG V
Sbjct: 162 LIEQFNTGRLLARISSSPGQV 182
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 394 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 290
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 394 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 290
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 394 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 290
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 394 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 290
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 394 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 290
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 394 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 290
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 291 TNSLLDALYTTSMIRVLRV 347
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 352 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 230
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,203
Number of Sequences: 27780
Number of extensions: 288543
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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