Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J11
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    23   1.7  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.4  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   7.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.4  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   7.4  

>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 23.0 bits (47), Expect(2) = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 559 K*IKNYLTKMINLFICYCNFFIIYLFLV 476
           K IK++L K  N+F  +C   I  L L+
Sbjct: 149 KGIKHFLKKWRNMFFTFCKSPIFCLVLL 176



 Score = 23.0 bits (47), Expect(2) = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 355 MLIK*ILVFVIFFNESLNFNVNFVKILKAYCVY 257
           M +  IL+F+    E  + + + VK ++AYC Y
Sbjct: 203 MAVSSILIFIAETVEPGSCSTDLVKRVQAYCDY 235


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 610 LYDVVSAQFNLKETLFYK*IKNYLTKMINLFICYCNFFIIYLFLVSGAAVVLS 452
           LY   ++ F +    F + +K YL     ++ CYC  FI    ++ G   V S
Sbjct: 30  LYKTYTSYFFMSSKSFVRGVKRYL-----IYFCYCANFIALFRVIFGTIFVYS 77


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -2

Query: 430 VFSVALLLPLMFTLMEFKGGGLF*KMLIK*ILVFVIFFNESLNFNVNFVKILKAYCVYVY 251
           + + A+ + +  TL +F+G  L    L   I +F+I F  SL   V+   I      Y Y
Sbjct: 200 ILNDAVAIVMFETLQQFQGKTLHFFTLFSGIGIFIITFFISLLIGVSIGLITALLLKYSY 259

Query: 250 NK*KSNTLSCI 218
            +   +  SCI
Sbjct: 260 LRRYPSIESCI 270


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 61  LIFSXIFSAGIHYKVKLKHGRNIHYVLK*LFSLVSNVADISSTLYEIN*KIE*YNLVYYF 240
           LIFS ++    H +  + + +N+   +   FS   N+A++ S       K + YN   YF
Sbjct: 287 LIFSLLYQITQHEQENMMNAQNLALCIGPSFSKADNIAELMSM------KDKEYNPYCYF 340

Query: 241 FTY 249
             Y
Sbjct: 341 LEY 343


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 479 SEWCCCCIKCWTEV 438
           SE  C CIKCW  V
Sbjct: 18  SERTCFCIKCWESV 31


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 KLYYSIFQFISYKVLLISATFETKLNNYF 141
           K Y+ I + ++ K L++S TF+T   +YF
Sbjct: 442 KKYFEIGERLTEKDLIVSKTFKTTRIDYF 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,981
Number of Sequences: 5004
Number of extensions: 35372
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)