Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J11
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical p...    30   1.3  
AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl tr...    27   9.1  

>Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  HSICINXLSASLPQSLIFSXIFSAGIHYKVKLKH 117
           H   +  +S SLP++L  + +FS G HY + L+H
Sbjct: 367 HLPSLGAISQSLPKTLKQTDLFSMGHHYSMTLEH 400


>AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 16  HSICINXLSASLPQSLIFSXIFSAGIHYKVKLKH 117
           H   +  +S SLP++L  + +FS G HY + L+H
Sbjct: 367 HLPSLGAISQSLPKTLKQTDLFSMGHHYSMTLEH 400


>Z78013-2|CAB01424.1|  453|Caenorhabditis elegans Hypothetical
           protein F15B9.6 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 616 KNLYDVVSAQFNLKETLFYK*IKNYLTKMINLFICYCNFFIIYLFL 479
           K +Y  +     + E  ++  I   +  +I++F+C+C+ F    FL
Sbjct: 379 KTIYATIDELIKIPEESWWSTILPVIAIIISIFVCFCDIFRCVKFL 424


>AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl trna
           synthetase protein2, isoform a protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 322 FFNESLNFNVNFVKILK-AYCVYVYNK*KSNTLSCITQSFNLFH 194
           +FNESL+ N    K+L+  + VY++   KS   S  T S  +FH
Sbjct: 118 YFNESLHLNSTHSKLLQTTFIVYLH---KSKRFSSKTISTYMFH 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,228,908
Number of Sequences: 27780
Number of extensions: 190120
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)