Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J09
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    71   2e-13
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    70   4e-13
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.91 
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   2.1  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   8.5  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   8.5  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
 Frame = -2

Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
           GTDI D KC+W+  +AL + TP Q+ I++DNYG    E+  R+K ++EEL +   +  +E
Sbjct: 251 GTDILDNKCSWIINLALAKCTPEQRVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYE 310

Query: 553 ETTYDLLRTQIQQV--TRGLPHELFFKILDNIFRRS 452
           E+    ++  I  V  + GL   +F   L  I++R+
Sbjct: 311 ESEVSEIKKLIDGVDESTGLKKSIFTTFLGKIYKRN 346


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
 Frame = -2

Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
           G DIQD KCTWL   A + A+  Q  ++  +YG    E IA IK LY ELQ+P  Y  FE
Sbjct: 255 GMDIQDNKCTWLVCYAEKFASADQLNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFE 314

Query: 553 ETTYDLLRTQIQQV--TRGLPHELFFKILDNIFRRS 452
           +   D +  +I  +  + GL   +F K    I++RS
Sbjct: 315 DDMVDSISKEIDLIDESTGLKKCIFTKFFQLIYKRS 350


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 595  YEELQLPHTYSVFEETTYD 539
            YE L LPHTY  FE  T D
Sbjct: 1316 YELLGLPHTYEAFETDTVD 1334


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 265 NFFSCAFIKSSAGAKTYNNLQRV 333
           N + CA  K + GA  YN LQR+
Sbjct: 712 NTYQCAMGKQAIGAIAYNQLQRI 734


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 579  YLIRTRSSKKLPTISLERRSSKSQGDYL 496
            YL    ++K++ T+SLE +   ++ DYL
Sbjct: 920  YLTIIEAAKRIATVSLESKLQFNESDYL 947


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 687 HCRGQLLPKNKSWKTITESINLKLSPGL 604
           HCR  +LPKN   +T+   I  +++ G+
Sbjct: 170 HCRKLILPKNTLLQTLGSYIPFEIAVGM 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,149
Number of Sequences: 5004
Number of extensions: 48487
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)