Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J09
(734 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 97 6e-20
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 97 6e-20
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 97 6e-20
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 97 6e-20
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 97 6e-20
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 87 8e-17
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 73 1e-12
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 97.1 bits (231), Expect = 6e-20
Identities = 44/93 (47%), Positives = 60/93 (64%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP + +E
Sbjct: 252 GTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYE 311
Query: 553 ETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 455
E +Y + I+Q LP +F + I++R
Sbjct: 312 EDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 344
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 97.1 bits (231), Expect = 6e-20
Identities = 44/93 (47%), Positives = 60/93 (64%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP + +E
Sbjct: 259 GTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYE 318
Query: 553 ETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 455
E +Y + I+Q LP +F + I++R
Sbjct: 319 EDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 351
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 97.1 bits (231), Expect = 6e-20
Identities = 44/93 (47%), Positives = 60/93 (64%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP + +E
Sbjct: 326 GTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYE 385
Query: 553 ETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 455
E +Y + I+Q LP +F + I++R
Sbjct: 386 EDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 418
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 97.1 bits (231), Expect = 6e-20
Identities = 44/93 (47%), Positives = 60/93 (64%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP + +E
Sbjct: 325 GTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYE 384
Query: 553 ETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 455
E +Y + I+Q LP +F + I++R
Sbjct: 385 EDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 417
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 97.1 bits (231), Expect = 6e-20
Identities = 44/93 (47%), Positives = 60/93 (64%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP + +E
Sbjct: 325 GTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYE 384
Query: 553 ETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 455
E +Y + I+Q LP +F + I++R
Sbjct: 385 EDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 417
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 86.6 bits (205), Expect = 8e-17
Identities = 41/93 (44%), Positives = 56/93 (60%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
GTDIQD KC L V L RATP Q QI+++NYG + E + R+K LYEEL LP + +E
Sbjct: 254 GTDIQDXKCNCLXVQCLXRATPEQYQILKENYGQKEAEKVPRVKALYEELDLPAVFLQYE 313
Query: 553 ETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 455
E +Y + I+Q LP +F + I++R
Sbjct: 314 EDSYSHIMALIEQYAAPLPPAVFLGLARQIYKR 346
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 72.5 bits (170), Expect = 1e-12
Identities = 31/64 (48%), Positives = 43/64 (67%)
Frame = -2
Query: 733 GTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFE 554
G D QD KC+WL V L +ATP Q QI+++NY + E +AR+K LYEEL LP + +E
Sbjct: 227 GNDFQDNKCSWLVVQCLLQATPEQYQILKENYRQKEAEKVARVKALYEELDLPAVFLQYE 286
Query: 553 ETTY 542
+ +Y
Sbjct: 287 KDSY 290
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,664,094
Number of Sequences: 237096
Number of extensions: 1551061
Number of successful extensions: 2736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2736
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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