Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J07
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    58   9e-10
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    30   0.38 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.7  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   3.5  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 25/49 (51%), Positives = 37/49 (75%)
 Frame = -3

Query: 713 QEASGKXVLLLPMGAGDDMAHSQNEKINVRNYIEGIKLFAAYLFEVGKL 567
           +++  K VLLLPMG GDD AHS NEK+++ N+++GIKLF  Y+ E+  +
Sbjct: 424 EQSLKKNVLLLPMGRGDDGAHSINEKLDLDNFLKGIKLFCTYVHELASV 472


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 423 GSLFISIYPSPGYERFHKI--KSFGKITKTIKTIS 521
           G ++   YP P YE+  +I   ++GK+ K I T++
Sbjct: 265 GPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVT 299


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 375 HDLTVLFPKRGYKIDCGS 428
           HDL  LF KR ++ DCG+
Sbjct: 74  HDLVDLFNKRHFRCDCGT 91


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 462 ERFHKIKSFGKITKTIKTIS 521
           +R   IK+  KITKTIKT++
Sbjct: 39  QRLKSIKNIEKITKTIKTVA 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,684
Number of Sequences: 5004
Number of extensions: 53696
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)