Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J07
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073     31   1.2  
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943...    28   6.4  

>04_03_0302 + 14102477-14102963,14103011-14103057,14103432-14104073
          Length = 391

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 6   FKKRTKIHVCPPLLSYAASKLQAKSLCHL 92
           F +RTK ++C PL+ Y   + +AKS  HL
Sbjct: 115 FARRTKWNICTPLVCYNLCRFRAKSGGHL 143


>08_01_0950 -
           9428506-9428693,9429223-9429595,9430127-9430572,
           9430654-9430785,9431129-9431236,9431428-9431533
          Length = 450

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +1

Query: 55  PPPSSKQNHYVICVSXXKXIQNYMXHLKKNVFLXLYXYYASFKLYLIKGMYFMSS 219
           P PS  QN  V C    K I  Y  +LKK   +    Y+      +IK M F  S
Sbjct: 60  PMPSQLQNT-VTCALNKKLIDFYNDYLKKGFSIRRSSYHYMGNTKIIKNMTFCCS 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,645
Number of Sequences: 37544
Number of extensions: 305779
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)