Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J06
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    28   1.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   1.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   1.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   1.8  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   2.3  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.3  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 574 EQKIMEKESLQK--IELIEDSIHKAKQQTKAEADFYHLKKQAE 452
           ++++MEKE  +K  I LIE+  HK  +Q + + +    K++ E
Sbjct: 138 KKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEE 180


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 411 RNMKRSPTIIRFTLEVIYPTCSYKQMLVKVS 319
           R M+   + I    + +YPTC+Y+Q+LV +S
Sbjct: 419 RAMQFLTSFISVCKKHLYPTCNYQQVLVSLS 449


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -3

Query: 559  EKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELKKYEALSNNNK 380
            EK+ +    L  + +HK  ++ +   D Y   ++A  +++      LEL K +  S N+K
Sbjct: 829  EKQRVSDTRLRLERMHKFIEKDQESIDNYEQNREALESEVATAEAELELLKEDFASENSK 888


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 535  ELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELKKYEALSN 389
            EL++D+ +  K   K+  D YH+      NKL + RE   L KY+ L N
Sbjct: 955  ELLKDTPNY-KSIFKSSLDIYHVVIDVNINKLPMYRE-SNLTKYKNLQN 1001


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 574  EQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYL 419
            E++   KE   KIE + +S    + +T AE DFY   +  E +++    E L
Sbjct: 1098 EKEERRKELAIKIEQVTNSCSDLELRTNAEQDFYAKNQDFEFDEIKRYEEQL 1149


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 574 EQKIME-KESLQKIELIEDSIHKAKQQTKAEA-DFYHLKKQAEANKLLLTREYLELKKYE 401
           E+KI E  +   K++ +   + + K++  AE  +FY+   Q +  KL L R+Y +    E
Sbjct: 203 EEKIEEISDETDKLQKLLRELDEEKEKVYAEEQEFYNNLNQFQIKKLSLERQY-DCANLE 261

Query: 400 ALSNNNKI 377
              N+ K+
Sbjct: 262 FEHNSRKL 269


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 228 CMCARYTKCKYIF---YLDNKGEVHSTFTPFKMGTLSP 332
           C+C  YTK ++I+   ++D     H +    K G+L P
Sbjct: 135 CLCKFYTKLRFIWGVKFIDKNAFYHISILKHKPGSLIP 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,966
Number of Sequences: 5004
Number of extensions: 48846
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)