Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J06
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   106   2e-23
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    31   0.93 
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    30   1.6  
U41017-6|AAC48215.1|  399|Caenorhabditis elegans C.elegans homeo...    29   2.1  
U42833-1|AAA83575.1|  724|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF002198-9|AAF99936.1|  450|Caenorhabditis elegans Hypothetical ...    28   6.6  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   6.6  
Z92786-6|CAB07208.1|  569|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z36237-2|CAE17761.1|  178|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC087078-1|AAG37943.1|  198|Caenorhabditis elegans Hypothetical ...    27   8.7  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  106 bits (254), Expect = 2e-23
 Identities = 49/108 (45%), Positives = 77/108 (71%)
 Frame = -3

Query: 643 AETARRKAIIEAXKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLK 464
           AET R+KA+IEA K A VA I  ++ + EKE+ + +  +E   + A +++KA+A+FY  +
Sbjct: 205 AETERKKAVIEAEKAAQVALIHQKRLLSEKETEKLLNQMEAESNLASERSKADAEFYKAQ 264

Query: 463 KQAEANKLLLTREYLELKKYEALSNNNKIYFGSDIPNMFLQANVGESV 320
           KQA++NK+LLT+EYLEL+K  A+++NNKIY+G  IP  F+     ++V
Sbjct: 265 KQADSNKILLTKEYLELQKIRAIASNNKIYYGDSIPQAFVMGTTQQTV 312


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = -3

Query: 601 EAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREY 422
           +  +A ++ + K  +  +     L E++I++    T +E     LKKQ +A+K+ L  E 
Sbjct: 56  KTRIASLEKDVKQEKNATKMAKSLNEETINEL---TLSEDLIESLKKQFQASKIELKEEI 112

Query: 421 LELKKYEALSNNNKIYF 371
           L   K E   +N+K YF
Sbjct: 113 LSKNKVEKDYSNDKRYF 129


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = -3

Query: 631 RRKAIIEAXKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAE 452
           R K I +  ++    K+Q E++ M++++ ++ +LI D   K K +       +   KQA+
Sbjct: 233 REKQINDDFEKRKQEKLQREEE-MKQQNQEREKLIADDFEKRKLEKLQREKLFEKNKQAK 291

Query: 451 ANKLLLTREYLELKKYEALSNNN 383
             +    +E  E +K E L   N
Sbjct: 292 LQREKAHQE-SERRKLEKLKREN 313


>U41017-6|AAC48215.1|  399|Caenorhabditis elegans C.elegans homeobox
           protein 39 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 540 KLNSLKTVFT---RPNNRQRQKLTFTISKNRLKPINFF 436
           +L+SL TVF    RPN   +Q L+ T+  NR    NFF
Sbjct: 328 QLDSLHTVFQQQDRPNREMQQALSATLKLNRSTVGNFF 365


>U42833-1|AAA83575.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK430.8 protein.
          Length = 724

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 558 RRNLYRKLNSLKTVFTRPNNRQRQKLT 478
           R NL+  L+SL  +F R +NR  QKLT
Sbjct: 396 RANLFIGLSSLHIMFAREHNRIAQKLT 422


>U12965-8|AAA20606.1|  345|Caenorhabditis elegans Hypothetical
           protein F23F12.4 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 161 EAGXADSAVACE---NESR*TDGNHIWRQVLRQKIEMHLKILTEICRFGWK 18
           + G A S + CE    ES   +G  IW+     +++M      +ICR  WK
Sbjct: 74  QIGGAISNLGCEVLSQESEQVNGTQIWKMDENTEVQMEHYYDGQICRSYWK 124


>AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical
           protein T05E7.5 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -3

Query: 574 EQKI--MEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELKK 407
           E+K+  +  E  + +E +++ +H+     +A  +FY  KK    NK+ L ++ +ELK+
Sbjct: 135 EKKVEDLNGEHQKSLEKLKERLHEKDAFIEACEEFYDEKK-INVNKMTLMKQEMELKR 191


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 603 KRPM*QKYNMNKKSWRRNLYRKLNSLKTVFTRPNNRQRQKLTFTISKNRLKPINF 439
           K+P   ++N N+K         L +        NNR+  ++T TI KN  K +NF
Sbjct: 419 KQPTEGRWNPNQKIEINGQGESLKTSIETVVLGNNRKSLEITATIPKNNNKLLNF 473


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 559 EKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELK 410
           EKE ++K + ++ +  K  +Q   +A  YH+  Q +  K  L R   +LK
Sbjct: 822 EKEMMRKAKWLKKARRKVSKQQIKKAGQYHIDMQKQIVKRSLKRAIRKLK 871


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 559 EKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELK 410
           EKE ++K + ++ +  K  +Q   +A  YH+  Q +  K  L R   +LK
Sbjct: 822 EKEMMRKAKWLKKARRKVSKQQIKKAGQYHIDMQKQIVKRSLKRAIRKLK 871


>AF002198-9|AAF99936.1|  450|Caenorhabditis elegans Hypothetical
           protein F35F10.11 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 394 RALHISSTPNIPESEEVYWLQPVF*DGKSQLLPLSVVWPCEYCL 525
           R++H S+  N  +  ++ W      DGK++L     VWP  Y L
Sbjct: 72  RSIHYSANVNYLDYTQLLWTCE---DGKNELAAGEYVWPFSYTL 112


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 559 EKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLTREYLELK 410
           EKE ++K + ++ +  K  +Q   +A  YH+  Q +  K  L R   +LK
Sbjct: 822 EKEMMRKAKWLKKARRKVSKQQIKKAGQYHIDMQKQIVKRSLKRAIRKLK 871


>Z92786-6|CAB07208.1|  569|Caenorhabditis elegans Hypothetical
           protein F47H4.9 protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 567 KSWRRNLYRKLNSLKTVFTRPNNRQRQKLTFTISKNRLKPI 445
           K   RN+ R+LNS  T+   P++R +++  +    N+LK +
Sbjct: 147 KDIMRNILRELNSEPTISPGPSDRYQEEYEYFPVYNQLKEL 187


>Z36237-2|CAE17761.1|  178|Caenorhabditis elegans Hypothetical
           protein C48D5.3 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 356 QHVLTSKCW*KCPHF 312
           +H L +KCW KCP F
Sbjct: 124 RHFLFNKCWKKCPDF 138


>AF024502-2|AAK77623.1|  591|Caenorhabditis elegans Hypothetical
           protein M151.4 protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/87 (17%), Positives = 42/87 (48%)
 Frame = -3

Query: 610 AXKEAHVAKIQYEQKIMEKESLQKIELIEDSIHKAKQQTKAEADFYHLKKQAEANKLLLT 431
           A +EA V + + +Q + E E  +K  L +++ HK +     +      KK+ +A ++ + 
Sbjct: 347 AVQEAQVLQEKLQQALKELEGKKKELLEQENAHKLRMDQFEDDTKKRHKKEIKALEVEVK 406

Query: 430 REYLELKKYEALSNNNKIYFGSDIPNM 350
           +    +K+++  +   +    +++  +
Sbjct: 407 KRNATIKEHQVAAQERRAKHDAEVEEL 433


>AC087078-1|AAG37943.1|  198|Caenorhabditis elegans Hypothetical
           protein Y34F4.2 protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 377 NLIIVGERFIFLQLQIFPSQKKFIGFSLFFEMVKVSFCLCLLFGL 511
           NL++V   F+F + Q     +KFI    F + + ++  L L+ GL
Sbjct: 75  NLVVVAYIFLFYESQNHQYSRKFIYLLKFIKYMLLASTLLLIVGL 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,106
Number of Sequences: 27780
Number of extensions: 273167
Number of successful extensions: 895
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)