Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J05
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    28   1.5  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    28   1.5  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.6  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    26   4.7  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   4.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    26   4.7  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   8.2  

>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 483 NKVFFSPFDDMIFRLILNDVPIR 415
           N  FF PFD++     +ND+P+R
Sbjct: 288 NNQFFIPFDEIGISKFMNDLPVR 310


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 196 KSFQIPNLVNNFHKIKDVLPCQAKY 122
           KSF +   +NN+   + VL CQ KY
Sbjct: 111 KSFALYKKINNYRSTRCVLVCQCKY 135


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 257 KYTKFGFLIIIFSYYDCHEVQKFSDTE 177
           KY++ G L+ I SY+D   V+ + D E
Sbjct: 505 KYSQSGILVYIPSYFDFVRVRNYMDEE 531


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 401 SLFANLIGTSFSIKRNIMSSNGLKNTLLQLLCHYVC 508
           SLF +L    + +  N M    L+N L  L C ++C
Sbjct: 23  SLFRSLTRMGYDVLVNSMDDFNLENLLRPLQCVFIC 58


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 422 GTSFSIKRNIMSSNGLKNTLLQLLCHY 502
           GTS ++  N +SSNG  N+L Q L  Y
Sbjct: 186 GTSNALGYNNISSNGAANSLEQKLAEY 212


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 435 LNDVPIRFANKEIFSREYRNWVGRFLIL 352
           +  VP +F   E+F  +Y  WVG+ +++
Sbjct: 298 IKGVPQKFHAFEVFLEQYPEWVGKVVLV 325


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 416 LIGTSFSIKRNIMSSNGLKNTLLQLLCHYVCVSMLSPRYI 535
           L  TSF+IK +   +  L  T  QLL    C     P+Y+
Sbjct: 510 LFETSFAIKASAFQNPQLLKTCSQLLSSCSCFLQNHPQYL 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,436
Number of Sequences: 5004
Number of extensions: 66422
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)