Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J05
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0649 - 20260501-20260512,20260620-20260833,20261207-202614...    29   2.8  
07_03_0644 - 20242283-20242294,20242402-20242615,20242989-202432...    29   2.8  
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    29   2.8  
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    29   4.9  

>07_03_0649 -
           20260501-20260512,20260620-20260833,20261207-20261429,
           20261706-20261931,20262051-20262494
          Length = 372

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 398 ISLFANLIGTSFSIKRNIMSSNGLKNTLLQLLCHYVCVSMLS 523
           I     +I     + RNI S  G+K   +  + +Y C+SMLS
Sbjct: 223 IGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLS 264


>07_03_0644 -
           20242283-20242294,20242402-20242615,20242989-20243211,
           20243488-20243713,20243833-20244276
          Length = 372

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 398 ISLFANLIGTSFSIKRNIMSSNGLKNTLLQLLCHYVCVSMLS 523
           I     +I     + RNI S  G+K   +  + +Y C+SMLS
Sbjct: 223 IGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLS 264


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
 Frame = +1

Query: 325 SSLFALSLLED*KPADPI-PIFAA------KYFFIRESNRYIIQYQTEYHVIKWTKKYLI 483
           SS   L + E  KP+  + PIF A      KY+   E++  + +Y  + +++K T K  +
Sbjct: 389 SSTKQLEVAETYKPSSHVNPIFMAVGADTSKYYSASEASDIVFRYVEKENLVKQTDKAKV 448

Query: 484 TIIMPLCMCFY 516
            + + LC   Y
Sbjct: 449 VLDVALCDALY 459


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 380 LYSRLNISLFANLIGTS-FSIKRNIMSSNGLKNTLLQLLC 496
           LY +LN+    NL+  S FS+  ++     L ++LLQLLC
Sbjct: 237 LYYQLNVGEPLNLVKDSTFSLSDDLKQLGFLSSSLLQLLC 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,568
Number of Sequences: 37544
Number of extensions: 325325
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)