Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_J05
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.3  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 99 WNTRQFSVMCNESVHFSLR 43
          W    FS++C    H+SLR
Sbjct: 7  WLILYFSIVCQAKAHYSLR 25


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 370 RPVFNPLIVKARITSF 323
           RPV+ P IVK R   F
Sbjct: 4   RPVYRPTIVKKRTKKF 19


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 62  DSLHITENCLVFHCITEST*ILCLARQYIFNF 157
           D LH+TE  LV   +  S      ++QY  +F
Sbjct: 183 DELHLTEYKLVEKWVNSSEIFYTTSQQYYGHF 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,005
Number of Sequences: 438
Number of extensions: 5231
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)