Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_J03
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 180 1e-45
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 178 3e-45
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 178 4e-45
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 177 8e-45
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 177 8e-45
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 175 2e-44
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 129 4e-34
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 87 2e-17
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 29 2.4
02_02_0106 + 6814391-6817007,6817086-6817462 29 3.2
04_04_1588 - 34633057-34633824 28 5.6
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 27 9.9
09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040 27 9.9
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 180 bits (437), Expect = 1e-45
Identities = 88/122 (72%), Positives = 98/122 (80%), Gaps = 1/122 (0%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD +RYLAE TG R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYE
Sbjct: 125 MKGDYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYE 184
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD-TQGDGDEP 297
ILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD T+ GDE
Sbjct: 185 ILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEV 244
Query: 296 AE 291
E
Sbjct: 245 KE 246
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 178 bits (434), Expect = 3e-45
Identities = 85/118 (72%), Positives = 97/118 (82%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD YRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYE
Sbjct: 131 MKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYE 190
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 300
ILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD D E
Sbjct: 191 ILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDTAE 248
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 178 bits (433), Expect = 4e-45
Identities = 84/118 (71%), Positives = 96/118 (81%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD +RYLAE TG R + + AYQ A +I+ ++ PTHPIRLGLALNFSVFYYE
Sbjct: 135 MKGDYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSPTHPIRLGLALNFSVFYYE 194
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 300
ILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD Q DG +
Sbjct: 195 ILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGD 252
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 177 bits (430), Expect = 8e-45
Identities = 82/118 (69%), Positives = 96/118 (81%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD +RYLAE +G+ R E + AY+ A +I+ A + PTHPIRLGLALNFSVFYYE
Sbjct: 108 MKGDYHRYLAEFKSGDERKQAAESTMNAYKAAQDIALADLAPTHPIRLGLALNFSVFYYE 167
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 300
ILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 168 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGD 225
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 177 bits (430), Expect = 8e-45
Identities = 83/111 (74%), Positives = 95/111 (85%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD YRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLALNFSVFYYE
Sbjct: 349 MKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLALNFSVFYYE 408
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD 321
ILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 409 ILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSD 459
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 175 bits (427), Expect = 2e-44
Identities = 84/118 (71%), Positives = 95/118 (80%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD +RYLAE +G R E++ AY+ A +I+ A + THPIRLGLALNFSVFYYE
Sbjct: 130 MKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYE 189
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 300
ILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLRDNLTLWTSD DG +
Sbjct: 190 ILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGD 247
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 129 bits (312), Expect(2) = 4e-34
Identities = 61/93 (65%), Positives = 73/93 (78%)
Frame = -3
Query: 560 AFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSY 381
A + ++ + PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++Y
Sbjct: 146 ASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENY 205
Query: 380 KDSTLIMQLLRDNLTLWTSDTQGDGDEPAEGGD 282
KDSTLIMQLLRDNL LW SD D D+ E D
Sbjct: 206 KDSTLIMQLLRDNLALWNSDMADDADDIRERTD 238
Score = 33.1 bits (72), Expect(2) = 4e-34
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3
Query: 650 KGDXYRYLAEVATGETRHSVVEDSQKAYQ 564
KGD YRYLAE TG + V E S AY+
Sbjct: 85 KGDYYRYLAEFKTGTEKIEVSELSLNAYE 113
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 86.6 bits (205), Expect = 2e-17
Identities = 50/114 (43%), Positives = 71/114 (62%)
Frame = -3
Query: 653 MKGDXYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYE 474
MKGD YRYLAE +TG + + + S AYQ A+ ++ FS+ E
Sbjct: 122 MKGDYYRYLAEFSTGTEKKAATDQSLMAYQ-AWPCAQL---------------FSLL--E 163
Query: 473 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 312
I+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 164 IMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -3
Query: 491 SVFYYEILNSPDKACQLAKQAFDDAIAEL-DTLNEDSYKDSTLIMQLLRD-NLTLWTSDT 318
S Y + PD + K++FD+ + E + +Y S + ++ D LWT +
Sbjct: 676 SFLTYPSMKVPDNFIYIHKRSFDECMVECRSNCSCVAYAYSNISSGIIDDTRCLLWTGEL 735
Query: 317 QGDGDEPAEGGDN*YLAA 264
D ++ +GG+N Y+ A
Sbjct: 736 I-DMEKVTQGGENLYIRA 752
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -2
Query: 231 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 73
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 243 KCVCWGECGEILVVAALGRLVAIALSV*RPK 335
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -2
Query: 648 RRLXQVPCRSGHRRNQTFCCRGFTESIPRCF*NQQGENAAHTPHKAGSGV 499
RR +VP R G RR F C G + + + E H G GV
Sbjct: 813 RRRHRVPTREGRRRRGGFSCGGANDGGGDVRADMRREGRRGLQHMEGEGV 862
>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
Length = 339
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 246 CV-CWGECGEILVVAALGRLVAIALSV*RPK 335
CV CW C L+VAAL A AL + +PK
Sbjct: 22 CVLCWCCCFLFLIVAALAGAAAYALFLYKPK 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,232
Number of Sequences: 37544
Number of extensions: 321741
Number of successful extensions: 913
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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