Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I23
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.58 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.58 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   7.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 18  IGLHGLWQFPRCLYPXSLPSAASLPFALRSXXALRSLFIFNLTITHFE--G*MPTYAVAP 191
           IGL  LW+FP   Y      A  +P+ +    A   +F+  L++      G +  + +AP
Sbjct: 37  IGLGNLWRFPYLCYKNG-GGAFMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAP 95

Query: 192 L 194
           +
Sbjct: 96  I 96


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 18  IGLHGLWQFPRCLYPXSLPSAASLPFALRSXXALRSLFIFNLTITHFE--G*MPTYAVAP 191
           IGL  LW+FP   Y      A  +P+ +    A   +F+  L++      G +  + +AP
Sbjct: 90  IGLGNLWRFPYLCYKNG-GGAFMVPYFIALALAGVPMFLMELSLGQMMTIGGLGVFKIAP 148

Query: 192 L 194
           +
Sbjct: 149 I 149


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 HTLKGECRHMLLHHWPFLFESS 216
           HT + +C H LL H P L + S
Sbjct: 330 HTPEPDCIHELLGHMPLLADPS 351


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 517 NCFSISVLSRVVLAKSDRMKFNKQVTSSRRKN 422
           +CF    L +  + ++D ++ +K V  + RKN
Sbjct: 76  SCFITCALEKSHIIQNDEIQLDKLVEMANRKN 107


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 203 SLNPLNVYNKLF 238
           S+NP+NVY K +
Sbjct: 35  SINPINVYTKAY 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 188 CNSICRHSPFKVCDCQV 138
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 290 YNLNFIVFANRHGFYI 337
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 190 HWPFLFESSQCIQQTF 237
           H+P++F  + CI Q+F
Sbjct: 117 HFPYVFGEAFCIIQSF 132


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 425 KQEEAFQCSFTYKASVDVLS 366
           K  + FQC   YK   D+L+
Sbjct: 115 KISKIFQCFMKYKTITDILN 134


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 79  QPVCPLLCARGLLCGL 126
           +P+C  +CA G +C L
Sbjct: 60  KPLCIKICAPGCVCRL 75


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 79  QPVCPLLCARGLLCGL 126
           +P+C  +CA G +C L
Sbjct: 60  KPLCIKICAPGCVCRL 75


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 52  VFTLXLCQVQPVCPLLCARGLLCGL 126
           +F + LC++   C +LC    +  L
Sbjct: 103 IFGIHLCKLWLTCDVLCCTASILNL 127


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 52  VFTLXLCQVQPVCPLLCARGLLCGL 126
           +F + LC++   C +LC    +  L
Sbjct: 103 IFGIHLCKLWLTCDVLCCTASILNL 127


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 52  VFTLXLCQVQPVCPLLCARGLLCGL 126
           +F + LC++   C +LC    +  L
Sbjct: 103 IFGIHLCKLWLTCDVLCCTASILNL 127


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 613 PVRKCYFC 590
           P+ KCYFC
Sbjct: 423 PLDKCYFC 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,203
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)