Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_I20
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 30 0.33
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 30 0.44
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 27 2.4
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 27 4.1
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 27 4.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 7.2
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 7.2
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 9.5
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 9.5
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 250 LIGKAEFAIDKTKYERLVT-YIEAMKNVPAVKSYFL 146
L+G AEF ++ +YER T Y E +K+V V F+
Sbjct: 406 LVGYAEFLMEHEEYERAATLYAETLKSVEEVALKFI 441
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 122 H*VSRQRRCQLQYARH*CCLLHAPQEKEGIKS 27
H V R+ R QY+ CCL++A + EG+K+
Sbjct: 427 HLVKRKSRLVRQYSLAWCCLINAIRRTEGVKA 458
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = -2
Query: 565 LFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF--NAQALEPS 392
+F+ V DE+ + L S LR D++ + + Y F A+A E +
Sbjct: 140 MFNDAFNEVIEDEEKRVVDLYPSS-LRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKN 198
Query: 391 MVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLWPFLERFE 260
V +GL+ L++ L+ +L GD D L+ + RF+
Sbjct: 199 -VRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFD 241
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = -2
Query: 673 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 494
IP D++F+ +DQK F S + AL I+ +LD+++ IP+ +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295
Query: 493 PLRRAQDKIL 464
+R + K+L
Sbjct: 296 CIRPNELKVL 305
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 694 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 593
L L +N D + IN D P W FSPK T+P
Sbjct: 91 LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 7.2
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Frame = -2
Query: 784 HLQTGDVXPPYSGKLRVFXMRFCPYAERT-----VLTLNAKNIPYDLVFINLDQKPEWIF 620
+LQT +V P + +RF PYA T ++ ++ NI DL +N K + F
Sbjct: 454 NLQTANVLPKLAEFRNNNFVRFSPYANITSFRENMINVHLSNIQCDLKDVNYYIKRKQGF 513
Query: 619 -NFSPKGTVPALEYEPGKA--LFDSNIINVYLDEKYPEIPLQASD 494
F+ G V L + G L S+ N + + P+ + D
Sbjct: 514 PTFTDLGVVDLLIGKQGMVVNLTLSSFSNTMFENELPDSFFKVED 558
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/97 (24%), Positives = 31/97 (31%)
Frame = -2
Query: 595 PALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF 416
PA E K +S N DEK E PL + + A
Sbjct: 497 PATNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQ 556
Query: 415 NAQALEPSMVETYHKGLEGLQKELETRSTKYLHGDEP 305
++ LEP T + L L KE + T EP
Sbjct: 557 VSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 682 AKNIPYDLVFINLDQKP 632
AK + YD +++NL +KP
Sbjct: 3 AKTVQYDNIYLNLSEKP 19
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 397 PSMVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLW 281
P V+ + + +K++ETR + ++PG V Y LW
Sbjct: 37 PRKVKIVKRKKQPARKQIETRPEYEMEPEQPGQV-YNLW 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,765
Number of Sequences: 5004
Number of extensions: 67183
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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