Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I19
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    29   0.52 
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   3.7  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 592 GELYKDDPVMLAKKIEECSKHRGRHNPERPKTPPNYWNPRWNVPEDTEELNRMNNAV 422
           GE+Y+ +   +A   +    H G H P+  KTP  Y   R+   ED E +++ +  +
Sbjct: 729 GEIYQHENCRIAYVAQAAFTHLGHH-PD--KTPSEYIQWRFQSGEDLEAMDKASRVI 782


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 595 YGE-LYKDDPVMLA--KKIEECSKHRGRHNPERPKTPPNYWNPRWNVPEDTEELNRMNN 428
           YGE + + DP  L   K + E    R  +    PK  P+ WNP     + ++ L  MNN
Sbjct: 27  YGENVLRSDPRWLKWEKYLREFDMTREGNVTNTPKAIPSSWNPN----DKSDSLELMNN 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,577
Number of Sequences: 5004
Number of extensions: 57191
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)