Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I17
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   6.0  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   7.9  

>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = -3

Query: 504 RHNVV*CQTLKIIIYTITGGMTSCESARGRYHRPAHFCRKAVPNAFRFEG-WSSRGNWT- 331
           RHN   C  + + +   +G +T CE     +    H    +V  AF  EG   ++ NWT 
Sbjct: 75  RHNTAPCDWVIVKLGPSSGRVTGCE-IDTTFFNGNHAPEVSVEAAFLPEGNPDAKTNWTP 133

Query: 330 -LELLSHGGWRRHL 292
            L  L  G  +RH+
Sbjct: 134 ILPKLPCGPTQRHI 147


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 451 SNCVNYNFESLTLHDVMPSPW 513
           S C++ N + +T+HDV+ + W
Sbjct: 226 SGCLSENDDIVTMHDVLDAQW 246


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 218 CLHGWTSTRPTWC*VVTGAHRHLQRKCRRHPP 313
           CLHGW  + P +   +    ++L +    H P
Sbjct: 9   CLHGWIQSGPVFSKKMGSVQKYLSKYAELHFP 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,037
Number of Sequences: 5004
Number of extensions: 59668
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)