Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I17
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333     31   0.67 
11_06_0237 - 21606240-21606395,21606499-21606706,21607565-216076...    31   0.89 
10_08_0778 + 20492822-20493920,20494605-20494648                       30   1.5  
10_08_0016 + 14127200-14127615,14127723-14127816,14127904-141280...    30   2.0  
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     28   6.2  

>02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333
          Length = 494

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 516 VNREHLLSRYLRISLEKFVPSCGFRT 593
           ++  H+LSR+ +IS++ FVP CG+ T
Sbjct: 59  IHLRHMLSRF-QISVDSFVPDCGYAT 83


>11_06_0237 -
           21606240-21606395,21606499-21606706,21607565-21607697,
           21607775-21607904,21607999-21608092,21609258-21609652
          Length = 371

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 420 GRYHRPAHFCRKAVPNAFRFEGW 352
           GR   PA FCRKA+ +  RFE W
Sbjct: 208 GREKAPAAFCRKALTSTDRFEMW 230


>10_08_0778 + 20492822-20493920,20494605-20494648
          Length = 380

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 482 KLSKL*FTQLLVV*PLASP-RGGGITAPPISAVKQYLMRFGLKGGAAVVIGP*NFYLTVG 306
           K  K   T  + V P+ASP +   +  P   A     + F   GGAA+ + P N+ L  G
Sbjct: 290 KALKKALTAAVGVQPVASPPKPYDLCFPKAVAGDAPELVFTFDGGAALTVPPANYLLASG 349

Query: 305 GGGICV 288
            G +C+
Sbjct: 350 NGTVCL 355


>10_08_0016 +
           14127200-14127615,14127723-14127816,14127904-14128033,
           14128113-14128245,14128342-14128549,14128683-14128838
          Length = 378

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 420 GRYHRPAHFCRKAVPNAFRFEGW 352
           GR   PA FCRKA  +  RFE W
Sbjct: 215 GREKAPAAFCRKAQTSTDRFEMW 237


>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 WKTLRQKTAKYQIQTLQNNKNCLIFFCCLHGW 232
           + T  Q   K+Q+Q + + K+C+I   C  GW
Sbjct: 258 YTTCEQFVEKHQLQNISSEKDCMICLAC--GW 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,790,495
Number of Sequences: 37544
Number of extensions: 434680
Number of successful extensions: 1043
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)