Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I16
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    35   0.014
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.6  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    27   3.6  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = -3

Query: 453 YFYFSRVW*NYDLFSVLSCFCVLLLK*FNIVIILRHNGPVVFHNSNYIVDEFRYCNQLCL 274
           + YF  +W  + LF ++  F +L++  FN+ ++++    V+F  S  +      C  +CL
Sbjct: 417 FSYFKAIWAEFSLFPMIIGFLLLIIGGFNLALLMQDKS-VIFRMSANMAPSVMKCLPVCL 475


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 384 VVHKNRTVQRKDHNFTTLWKNKNKTIYKLTDCIL 485
           ++H  +  +  DH  T ++  K   IY L +CIL
Sbjct: 783 IIHDIKEARDSDHASTRMYFTKESHIYTLLNCIL 816


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 530 SYTYPINCFNYEHKSWLASIKCSTDTQYYYTRVIC 634
           SY YP + F   H  W       TDT Y+     C
Sbjct: 193 SYFYPQDSFLVSHAEWQDGNGIWTDTDYFAAMADC 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,348
Number of Sequences: 5004
Number of extensions: 47968
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)