Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I15
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   103   3e-23
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    97   2e-21
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   3.5  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   8.2  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   8.2  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  103 bits (246), Expect = 3e-23
 Identities = 52/89 (58%), Positives = 60/89 (67%)
 Frame = -1

Query: 287 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 108
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 107 KFPLTXEAAMKKIEDNNTLGFIVHTSANK 21
             P+  E+AMKKIED+NTL F VH  ANK
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANK 91


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 49/89 (55%), Positives = 58/89 (65%)
 Frame = -1

Query: 287 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 108
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 107 KFPLTXEAAMKKIEDNNTLGFIVHTSANK 21
             P+  E+AMKKIED+NTL F VH  ANK
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANK 91


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -1

Query: 206 HFRRPKTFEPPRHPKY---PRKSLPKRNRMDAY-NIIKFPLTXEAAMKKIEDNNTLGFIV 39
           HF  PK  E  R  +    P + LP+  +++   +I++ P+  +A  K I DN TLG+ +
Sbjct: 275 HFVDPKNKEHDRFDEVSHMPLRLLPRGVQLEGKTDILEMPI-GDAVKKGIVDNTTLGYFM 333


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 123 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 296
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 297 YFFLSLNPSL 326
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 387 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 298
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 365 AWVWQFWLLL 394
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 365 AWVWQFWLLL 394
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,652
Number of Sequences: 5004
Number of extensions: 30484
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)