Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_I15
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 104 4e-23
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 101 3e-22
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 30 1.4
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 30 1.4
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 30 1.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 3.2
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical... 27 7.5
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 27 9.9
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 104 bits (250), Expect = 4e-23
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = -1
Query: 281 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 102
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 101 PLTXEAAMKKIEDNNTLGFIVHTSANKH 18
PLT E+AMKKIE++NTL FIV ANK+
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKY 98
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 101 bits (243), Expect = 3e-22
Identities = 48/90 (53%), Positives = 64/90 (71%)
Frame = -1
Query: 287 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 108
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 107 KFPLTXEAAMKKIEDNNTLGFIVHTSANKH 18
K P T E++MKKIED+NTL FIV ANKH
Sbjct: 68 KAPHTTESSMKKIEDHNTLVFIVDEKANKH 97
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -1
Query: 257 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTXEAA 81
V+ G HG R I+N++ R P F P H P P+++ +D + + +T E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 80 MKKIEDNNTLGFIVH 36
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -1
Query: 257 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTXEAA 81
V+ G HG R I+N++ R P F P H P P+++ +D + + +T E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 80 MKKIEDNNTLGFIVH 36
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -1
Query: 257 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTXEAA 81
V+ G HG R I+N++ R P F P H P P+++ +D + + +T E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 80 MKKIEDNNTLGFIVH 36
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -1
Query: 257 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTXEAA 81
V+ G HG R I+N++ R P F P H P P+++ +D + + +T E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 80 MKKIEDNNTLGFIVH 36
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 228 YSLPMFTFYNLPLSLKCFSNRFHYFF 305
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 290 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 153
P K LK K+ K +H K ++K+ + + P PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156
>AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical
protein Y105C5A.22 protein.
Length = 174
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 245 EHGKRVRKI-RNSVHFRRPK-TFEPPRHPKYPRKSLPKRNRMD 123
E K++RKI RN H R+ T + P Y R+S P+RN D
Sbjct: 122 ERRKKMRKIGRNFSHDRQQSSTSLSAQPPVYRRRSEPRRNDCD 164
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 209 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTXEAAM 78
+ FRR + RH R+++P ++ I KFP E A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,492,689
Number of Sequences: 27780
Number of extensions: 174983
Number of successful extensions: 643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -