Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I14
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   0.91 
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.8  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   6.4  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   6.4  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    26   6.4  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   8.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.5  

>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 576 VPLSDFL*RIHSVFYPFSLLHTSIATFASLLHAIAFHPPLSLSNKHITTAI 728
           V +SD + RI+S F  FSL H  +   +S L    +   LS+++  I T++
Sbjct: 470 VAISDIVTRINSAFGDFSLDHLPVTILSSDLSYPQYLALLSVADAFIVTSL 520


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 456 LFL*IFPHS*LTLS*QPHFHXVSSHVHTIPNVHSSASLSXVPLSDFL*RIHSVFYPFS 629
           LF  ++P   +TL   P      S + TI +V+S  ++        L R+H  FY  S
Sbjct: 84  LFYTLYPFQSITLPLMPFLEKTESSILTISHVYSPPTIITFDGFKRLLRMHVPFYTLS 141


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 628 RYSTHPSQHSHLCCMQSPFIRHFRCPT 708
           ++ T  S+H+++ C   P++  F C T
Sbjct: 12  QFLTWNSKHNYIVCCSGPYLLGFSCST 38


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 393 RSLPSYPYRLSHNPSISSXVYLFL 464
           R LPS PYR+   P ++   YL L
Sbjct: 232 RELPSIPYRVLDAPGLAGDFYLNL 255


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 489 LTMNVERFRERGRPXKKWMD 430
           LT+ +ERF +R R  +KW D
Sbjct: 70  LTVRMERFIQRYRSRRKWSD 89


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +1

Query: 346 ATCFLLPYSSIIYHFFAHSPPTHIV--FHTI 432
           A CFLLP   IIY  F     T +    HT+
Sbjct: 167 AVCFLLPVGVIIYTMFGGIKATFLTDYIHTV 197


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 482  IVNTLLTTSFSXRLITCPYHPKRALLSFS 568
            +++TL+  + S  ++ C Y  K+ + SFS
Sbjct: 1157 VLSTLIAAALSPNVVKCVYPDKKFVASFS 1185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,621
Number of Sequences: 5004
Number of extensions: 55813
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)