Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I13
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   1.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.2  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   5.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   5.5  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    24   7.3  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    24   9.7  

>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 263 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 361
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 331 NSHIRLPCSITKSKS 375
           NSH+ LPCS+  +KS
Sbjct: 123 NSHVPLPCSLVLTKS 137


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 386 IRPADFDLVIEQGNLI*EFGFHYTENGDKLLHVCKRTNYKNEK 258
           I+P  F+ ++ Q  L+ E+      N  +  +  KRT Y  +K
Sbjct: 214 IQPDAFEHLLNQAGLVLEYSIEPQVNNSEYKNFAKRTMYIYKK 256


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 274 IIKMKNRFHYCYPWR*CDFGLRH 206
           + K ++R +   PWR  DFG+ H
Sbjct: 387 MFKSRDRSYRDLPWRVADFGVLH 409


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 320 YTENGDKLLHVCKRTNYKNEKPLSLLLPLEIMRFWVT 210
           Y  NG   +++C     + +K L+ L+PL+  +F+VT
Sbjct: 155 YFRNGGSPIYLCFA---EYDKRLNCLVPLKTFQFYVT 188


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 325 KPNSHIRLPCSITKSKSAGRIH 390
           KPN    +PC+ITK      I+
Sbjct: 157 KPNLEFLMPCTITKLSKGENIY 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,039
Number of Sequences: 5004
Number of extensions: 28881
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)