Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I13
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32679-1|CAA83590.1|  154|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   3.6  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    26   8.4  

>Z32679-1|CAA83590.1|  154|Caenorhabditis elegans Hypothetical
           protein C05B5.1 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 154 TSVCMLLIFKSIINNSKNGVTQNRIISKGNNNESGFSFL*FVRLQTCNNLSP 309
           + VC L++  S+IN  K G T +  +          S +  ++L+T  NLSP
Sbjct: 3   SKVCTLILLFSVINQMKCGSTTDCAMRVFKETIKEMSEVADLQLETLQNLSP 54


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 252 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 130
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 252 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 130
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 193 NNSKNGVTQNRIISKGNNNESG 258
           NNS N V  N +   GNN  SG
Sbjct: 150 NNSNNNVVNNYLTVYGNNGSSG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,419,298
Number of Sequences: 27780
Number of extensions: 156789
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)