Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I12
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   262   4e-71
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   260   1e-70
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.1  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   4.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   8.5  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  262 bits (642), Expect = 4e-71
 Identities = 126/180 (70%), Positives = 143/180 (79%)
 Frame = -1

Query: 734 CLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAK 555
           CLAPLAKVI+D F I EGLM            VDGPS K WR GRGA  NIIP+STGAAK
Sbjct: 156 CLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215

Query: 554 AVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILG 375
           AVGKVIPALNGKLTGMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LG
Sbjct: 216 AVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLG 275

Query: 374 YTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 195
           YTED VVS+DF GD+HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+ Y  SKD
Sbjct: 276 YTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTASKD 335


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  260 bits (638), Expect = 1e-70
 Identities = 125/180 (69%), Positives = 143/180 (79%)
 Frame = -1

Query: 734 CLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQNIIPASTGAAK 555
           CLAPLAKVI+D F I EGLM            VDGPS K WR GRGA  NIIP+STGAAK
Sbjct: 156 CLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215

Query: 554 AVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEAAEGPLKGILG 375
           AVGKVIPALNGKLTGMAFRVP  +VSVVDLTV+L KP +YE IK  +K A+EGP+KG+LG
Sbjct: 216 AVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLG 275

Query: 374 YTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVIDLIKYIQSKD 195
           YTED VVS+DF GD+HSSIFDA+AGI L+  FVKL+SWYDNE+GYS RV+DL+ Y  +KD
Sbjct: 276 YTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTAAKD 335


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 354 HNLIFSIPE---NALQRTFSCLLDLLLDGF 434
           +++I  IPE   N++Q T  C+LD +LD F
Sbjct: 174 NDMIDEIPEKLENSIQTTIDCVLDFVLDVF 203


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 299 ISLNDNFV-KLISWYDNEYGYSSRVIDLIKYI 207
           +  +DNFV K I+WY N   YSS +    +Y+
Sbjct: 307 LGYSDNFVNKGINWYYNWGSYSSGLSSSFEYV 338


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
 Frame = +1

Query: 310 ASKIEECESPMKSEDTT*SSVYPRMPFKGPSAASLTFCLMAS*LAGFPR-RTVRSTTDTL 486
           +SK EE  +   S   T   + P  P+  PS A  +     S  AG+   +T  +TT+  
Sbjct: 303 SSKREEAAAEPSSSTAT--DIPP--PYSTPSVAGASDYSTPS--AGYQTVQTTTTTTEAA 356

Query: 487 ATGTRNAI---PVSLPLRAGITLPTALAAPVEAGMMFC*APRPS 609
           A     A    P  +P  A   + T +AAPV A       P P+
Sbjct: 357 AAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPA 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,313
Number of Sequences: 5004
Number of extensions: 46847
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)