Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I11
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   4.4  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   4.4  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   5.9  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   7.7  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 87  SVAIRLQREVVMSIVNFYRTL*SCFATEI 173
           SVAI LQR  V S+   Y +L  CFA  +
Sbjct: 319 SVAISLQRIKVSSLCILYPSLACCFADSL 347


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 226 DGSRRFIISAWVNIITLPISVAKQL*SVR*KLTIDITTSR 107
           +G+R+ I+   VNI+  PI  A Q   +R  L   I  SR
Sbjct: 181 EGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESR 220


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 314 VKNIFKTICYSASACRRFSLYKNMCLQTFG 225
           +KN +     S S CR+  L KN  LQT G
Sbjct: 157 LKNGYMITGLSLSHCRKLILPKNTLLQTLG 186


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 279 ICVSAIFFV*KYVLTNFWTVVDGLL 205
           +C++A+FF+  + LT F  V +G L
Sbjct: 208 LCLAAVFFLGYFPLTIFMVVANGKL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,911
Number of Sequences: 5004
Number of extensions: 38305
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)