Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I11
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    30   1.0  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    30   1.0  
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    28   4.1  
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical p...    28   5.4  

>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS*QIYLNFLNKKKVEKILK 517
           RI   +++  Y   L+    P  L +V R F+F+ DND +H+     ++  +++V     
Sbjct: 183 RIQSIMDRFQYENILETTMRPWALQNVGRGFVFQQDNDPKHTSLHVRSWFQRRRVHL--- 239

Query: 518 NMLWPS 535
            + WPS
Sbjct: 240 -LDWPS 244


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS*QIYLNFLNKKKVEKILK 517
           RI   +++  Y   L+    P  L +V R F+F+ DND +H+     ++  +++V     
Sbjct: 212 RIQSIMDRFQYENILETTMRPWALQNVGRGFVFQQDNDPKHTSLHVRSWFQRRRVHL--- 268

Query: 518 NMLWPS 535
            + WPS
Sbjct: 269 -LDWPS 273


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS*QIYLNFLNKKKVEKILK 517
           RI   +++  Y   L+    P  L +V R F+F+ DND +H+     ++  +++V     
Sbjct: 142 RIQSIMDRFQYENILETTMRPWALQNVGRGFVFQQDNDPKHTSLHVRSWFQRRRVHL--- 198

Query: 518 NMLWPS 535
            + WPS
Sbjct: 199 -LDWPS 203


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS*QIYLNFLNKKKVEKILK 517
           RI   +++  Y   L+    P  L +V R F+F+ DND +H+     ++  +++V     
Sbjct: 142 RIQSIMDRFQYENILETTMRPWALQNVGRGFVFQQDNDPKHTSLHVRSWFQRRRVHL--- 198

Query: 518 NMLWPS 535
            + WPS
Sbjct: 199 -LDWPS 203


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS 463
           RI   +++  Y    +    P  L +V R F+F+ DND +H+
Sbjct: 142 RIQSIMDRFQYENIFETTMRPWALQNVGRGFVFQQDNDPKHT 183


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS 463
           RI   +++  Y    +    P  L +V R F+F+ DND +H+
Sbjct: 212 RIQSIMDRFQYENIFETTMRPWALQNVGRGFVFQQDNDPKHT 253


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 338 RITRRLNKEGYLKTLKDAAIPSGLNHVAREFIFKPDNDLRHS 463
           RI   +++  Y    +    P  L +V R F+F+ DND +H+
Sbjct: 212 RIQSIMDRFQYENIFETTMRPWALQNVGRGFVFQQDNDPKHT 253


>Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical
           protein C15H11.6 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 179 RNDIYPCGYNKPSTTVQKFVSTYFYTKKIADTQMPNNKLF*KYFSLNFKIVHT 337
           RN  Y  G ++  T V++F+ TY+     AD Q    +L   Y + N    HT
Sbjct: 203 RNGYY--GSDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHT 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,326,262
Number of Sequences: 27780
Number of extensions: 210164
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)