Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I07
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   3.4  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   5.9  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 361 LSINEAFKKH*KKKNRYAHQKCNYVNLKINFINSL 257
           LS  E+  K+   + + A QKC+ +  KINF N L
Sbjct: 843 LSSMESINKNQANELKLAKQKCSNLQEKINFGNKL 877


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 631 KLTRAYEKLFVPLRRLLTTRLN 566
           KL R  EKL  P R LL  +LN
Sbjct: 619 KLNRTKEKLLTPFRNLLMEQLN 640


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 19  CIFCLFIIYSICYQNVHKLNYNYMLLKIFLNISL*KYRY 135
           C FC +I+  + +    K+N     L+IF  I+L  + Y
Sbjct: 217 CDFCSYILMGLAWTCWPKVNIILQFLRIFGGIALIVFNY 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,512
Number of Sequences: 5004
Number of extensions: 46756
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)