Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I07
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    30   1.3  
AC006617-7|AAF39768.2|  302|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    27   9.5  

>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 544 IVLFIIKSFIFSPDRQNKKKLNYVDTINCPDAE 446
           IV ++I  F   PD QN  KLN + TI CP  E
Sbjct: 162 IVGYLIPPFFHIPD-QNAAKLNLLQTIPCPTEE 193


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 76  NYNYMLLKIFLNISL*KYRYSFFLNYILHYSCSQNAQL*FLWLIIICPIV 225
           N+ Y ++ + + + +  YRYSFF+ ++ H    + + L F  L+  C IV
Sbjct: 51  NFIYSVVNVSVPLDIHNYRYSFFI-FVRHGWFMERSDLNFHILVARCSIV 99


>AC006617-7|AAF39768.2|  302|Caenorhabditis elegans Hypothetical
           protein C39B5.3 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +2

Query: 188 FDSFGLLLFVRLFSKSDPIEYNYERI 265
           FDS  L   V LF+KSDPIE  +ERI
Sbjct: 153 FDSQALDYMVLLFAKSDPIE-QFERI 177


>Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical
           protein T21B4.5 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 562 SA*LFCIVLFIIKSFIFSPDRQNKKKLNYVDTINCPDAE 446
           SA  F I+  +  +F+  PD QN+ K++ + T+ CP  E
Sbjct: 154 SANFFTIMFLLTVTFLNLPD-QNQAKIDILKTLPCPTKE 191


>Z81137-3|CAB03471.1|  338|Caenorhabditis elegans Hypothetical
           protein W02D9.4 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 175 DYNYSVEYNLKKNCTYIFTMRYLKKSLVACSYS*VC 68
           D  Y  +  L KN T I  ++Y KK+   C Y   C
Sbjct: 26  DSLYETKPELYKNLTRIHRLKYFKKNGTICGYPFTC 61


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 480 FNFFLFCLSGLNINDLIINSTIQNNYALQFSRVVSKRR 593
           FN+    +SGL++  L ++  I   + L + R +SKRR
Sbjct: 68  FNWIGLAVSGLSLTLLNVDKLIYFRWPLNYDRSMSKRR 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,326
Number of Sequences: 27780
Number of extensions: 253915
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)