Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I06
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.98 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 319 NVAYAKQPSTHRYYVTIVSIWYARAN 242
           N+ YA  P+T  YY+  V+   +R++
Sbjct: 109 NIQYALNPNTEEYYIIEVNARLSRSS 134


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 316 VAYAKQPSTHRYYVTIVSIW 257
           + YAK  +  R ++TI+ +W
Sbjct: 292 IKYAKHKNNRRVWLTILLVW 311


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 572 PNRSSRSRVLAKLTNSNSFIYI*ILRKYHNIXNFFSYFLNAV 697
           PNR   ++ + K+ N  ++I   ++   HN  N+    LNA+
Sbjct: 781 PNRYREAKQIYKVGNVQAYIDGNVVFVCHNGMNWMPTHLNAL 822


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 16  INTKNIYQPLCNNHVNR 66
           + T+   QP+C N +N+
Sbjct: 349 METRGFLQPVCQNEMNK 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,650
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)