Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I05
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.81 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   3.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   4.3  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   7.5  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 129 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKIL 31
           +S + KN +L   K+    P+C+ +T + SF Y IL
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAIL 383


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 503 KGKTSGVRRNVMV*VSGSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 348
           +  + G+R ++     GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 9   QSSSKGLRSSIFF--QGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -3

Query: 528 KRSLTVAVQREDVRCASQCDGISVGLVSAPNLYLCICVRAC---LCARRPHLPMHTLYIF 358
           +R+ T A+     R AS  DG+S  L+S  N      +  C   LC +  H P     +F
Sbjct: 473 RRAATAALFEVIGRHASIPDGLS--LISHINYVSVTDISNCYGDLCMKVAHFPQFRSCVF 530

Query: 357 IKYVRKKNHWKI 322
            +      HW +
Sbjct: 531 QRLFTNLQHWDV 542


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 314 NVYSVSASSQPEATPRSLAPCTFINVINV*KNLTNSVKRIN 192
           N+Y       PE T +S+ PCT + ++ + + L    K IN
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKILEYLGVYNKIIN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,583
Number of Sequences: 5004
Number of extensions: 43403
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)