Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_I05
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0158 + 2332381-2333211                                           30   1.5  
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           28   7.8  
04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246...    28   7.8  
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728     28   7.8  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    28   7.8  

>09_01_0158 + 2332381-2333211
          Length = 276

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 311 VYSVSASSQPEATPRSLAPCTFINVINV*KN-LTNSV 204
           V ++SA+    A PR LA C ++NVI++  N LT S+
Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDLHANQLTGSI 163


>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 272 PRSLAPCTFINVINV*KN-LTNSV 204
           P SLA CT++N++N+  N LT ++
Sbjct: 166 PESLANCTYLNIVNLQNNKLTGAI 189


>04_01_0204 +
           2467657-2467781,2467955-2468044,2469071-2469169,
           2469353-2469371,2469965-2470021,2470585-2471265,
           2471639-2471742,2471919-2472057,2472173-2472334,
           2472565-2472681
          Length = 530

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 192 IYSFNRVS*IFLNIYYINECTRSERARRRLGLATCG 299
           I  ++ +   FL + +I    R+  ARR+LG  +CG
Sbjct: 125 IVKWSEIMEFFLTMEFIIRSIRNSTARRKLGYLSCG 160


>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
          Length = 463

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 458 SGSCR-LLTYICVYVCVRASVRGARTFRC 375
           SG CR  L Y+ +   + A VRGA TFRC
Sbjct: 365 SGYCRSALDYLELQPDLSALVRGAHTFRC 393


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -1

Query: 131  IFLLLVKT*FYRNGK*IRSVIILPRLIHSVIKFYKRHTENKCS 3
            ++LLL++  F  +GK +  +  LPR+I  V++FY   T+ + S
Sbjct: 1369 LYLLLIQY-FECDGKCLPMLCGLPRIIDIVLQFYSEKTDLRSS 1410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,169
Number of Sequences: 37544
Number of extensions: 235323
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)